View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6556_high_2 (Length: 321)

Name: NF6556_high_2
Description: NF6556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6556_high_2
NF6556_high_2
[»] chr1 (10 HSPs)
chr1 (43-236)||(23182117-23182310)
chr1 (6-173)||(4977518-4977685)
chr1 (9-173)||(5316053-5316217)
chr1 (1-173)||(21741503-21741675)
chr1 (1-173)||(50880843-50881014)
chr1 (1-106)||(50881019-50881124)
chr1 (1-68)||(4977445-4977512)
chr1 (65-106)||(4977399-4977440)
chr1 (65-106)||(5316230-5316271)
chr1 (237-269)||(23181930-23181962)
[»] chr5 (6 HSPs)
chr5 (1-173)||(23285500-23285672)
chr5 (1-173)||(22987059-22987231)
chr5 (1-174)||(27078486-27078659)
chr5 (1-174)||(30853563-30853735)
chr5 (58-173)||(16592486-16592601)
chr5 (65-106)||(23285450-23285491)
[»] chr4 (11 HSPs)
chr4 (1-173)||(48208744-48208916)
chr4 (1-173)||(9579067-9579239)
chr4 (1-173)||(9584762-9584934)
chr4 (1-173)||(54779733-54779905)
chr4 (1-173)||(10978401-10978573)
chr4 (1-173)||(35780124-35780296)
chr4 (1-173)||(47128280-47128452)
chr4 (6-173)||(23510434-23510600)
chr4 (1-173)||(34769149-34769321)
chr4 (72-164)||(10431126-10431218)
chr4 (65-106)||(47128457-47128498)
[»] chr2 (5 HSPs)
chr2 (6-163)||(29940179-29940336)
chr2 (1-164)||(34715855-34716018)
chr2 (1-164)||(34693443-34693606)
chr2 (65-106)||(29940128-29940169)
chr2 (65-106)||(40445383-40445424)
[»] chr8 (3 HSPs)
chr8 (54-190)||(45472543-45472679)
chr8 (1-173)||(41878463-41878635)
chr8 (237-269)||(45472430-45472462)
[»] chr6 (1 HSPs)
chr6 (1-173)||(19740817-19740989)
[»] chr3 (3 HSPs)
chr3 (1-173)||(3954466-3954638)
chr3 (1-138)||(8073662-8073799)
chr3 (65-106)||(8073616-8073657)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 23182310 - 23182117
Alignment:
Q  43 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaacattcaaattaattaaagagattttctttacttaccaaatagt 142  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23182310 cagtgttgttctcaacattcaacaaatctctatcaatctctattttagggatttcaacattcaaattaattaaagagagtttctttacttaccaaatagt 23182211  T
Q  143 gttgtgttggaaaggggaaaaccaattgaaatactttgcttgttgagaatgagagtctgctgtctgcaactgcaagcgagtttctgatgaatga 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23182210 gttgtgttggaaaggggaaaaccaattgaaatactttgcttgttgagaatgagagtctgctgtctgcaactgcaagcgagtttctgatgaatga 23182117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 4977518 - 4977685
Alignment:
Q  6 ttgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaacattca 105  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  4977518 ttgttttggacaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattca 4977617  T
Q  106 aattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    ||||||| ||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  4977618 aattaatgaaagagagtttctttacttaccaaacaatgttgttttggaaaggggaaaaccaattgaaa 4977685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 5316217 - 5316053
Alignment:
Q  9 ttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaacattcaaat 108  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||    
T  5316217 ttttggaaaggggaaaaccaattgaaatttgaaacagtgttgttttcaacattcaacaaatttatatcaatctctattttagcaatttcaacattcaaat 5316118  T
Q  109 taattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||  |||||||    
T  5316117 taatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 5316053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 21741503 - 21741675
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||  ||||||||    
T  21741503 cagtgttgttttgaaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatttttatcaatctttattttagcaatttcaac 21741602  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||  |||||||    
T  21741603 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 21741675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 50881014 - 50880843
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  50881014 cagtattgttttgaaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaac 50880915  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||| | ||| ||||||||||||| ||| |||| |||||||||| |||||  |||||||    
T  50880914 attcaaattaatgaaagacagtttatttacttaccaaacagt-ttgttttggaaagggaaaaacttattgaaa 50880843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 50881124 - 50881019
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  50881124 cagtattgttttgaaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaac 50881025  T
Q  101 attcaa 106  Q
    ||||||    
T  50881024 attcaa 50881019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4977445 - 4977512
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaa 68  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4977445 cagtgttgttttggacaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaa 4977512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 4977399 - 4977440
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  4977399 caaatctctatcaatctctattttagcaatttcaacattcaa 4977440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 5316271 - 5316230
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  5316271 caaatctctatcaatctctattttagcaatttcaacattcaa 5316230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 23181962 - 23181930
Alignment:
Q  237 atttgtgaatcggtggtgatggaatggatggaa 269  Q
    |||||||||||||||||||||||||||||||||    
T  23181962 atttgtgaatcggtggtgatggaatggatggaa 23181930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 23285500 - 23285672
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  23285500 cagtgttgttttggaaaggggaaaatcgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 23285599  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||  |||||||    
T  23285600 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 23285672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 22987059 - 22987231
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  22987059 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattctacaaatctctatcaatctctattttagcaatttcaac 22987158  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| ||| |||| ||||||||||||||||  |||||||    
T  22987159 attcaaattaatgaaagagagtttatttacttaccaaacagtattgttttggaaaggggaaaactgattgaaa 22987231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 27078659 - 27078486
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  27078659 cagtgttgttttgaaaaggggaaaaccgattgtaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 27078560  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaat 174  Q
    |||||||||||| ||||||| ||| |||||||| ||||  ||||||| ||||||||||||||||  ||||||||    
T  27078559 attcaaattaatgaaagagagtttatttacttatcaaactgtgttgttttggaaaggggaaaactgattgaaat 27078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 30853735 - 30853563
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  30853735 cagtgttgttttggaaaggggaaaaccgattgaaatttgacacagtgttgttttcaacattcaacaaatctctatcaatctcta-tttagcaatttcaac 30853637  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaat 174  Q
    |||||||||||||||||||| ||| ||||||||||||| | | |||| ||||||||||||||||  ||||||||    
T  30853636 attcaaattaattaaagagagtttatttacttaccaaacactattgttttggaaaggggaaaactgattgaaat 30853563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 16592486 - 16592601
Alignment:
Q  58 cattcaacaaatctctatcaatctctattttagggatttcaacattcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaagg 157  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||| ||| |||||    
T  16592486 cattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagg 16592585  T
Q  158 ggaaaaccaattgaaa 173  Q
    |||||||  |||||||    
T  16592586 ggaaaactgattgaaa 16592601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 23285450 - 23285491
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  23285450 caaatctctatcaatctctattttagcaatttcaacattcaa 23285491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 48208916 - 48208744
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  48208916 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaatagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 48208817  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||  |||||||    
T  48208816 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 48208744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 9579067 - 9579239
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9579067 cagtgttgttttggaaatgggaaaaccgattgaaatttgaaatagtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaac 9579166  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||  |||||||    
T  9579167 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 9579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 9584762 - 9584934
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9584762 cagtgttgttttggaaatgggaaaaccgattgaaatttgaaatagtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaac 9584861  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||  |||||||    
T  9584862 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 9584934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 54779905 - 54779733
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  54779905 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacaatgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 54779806  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| ||||||||  |||||||||||||||  |||||||    
T  54779805 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttatggaaaggggaaaactgattgaaa 54779733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 10978573 - 10978401
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  10978573 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaaaaaatctctatcaatctctattttagcaatttcaac 10978474  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||  ||||||||||| ||||  |||||||    
T  10978473 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgctttggaaagggggaaactgattgaaa 10978401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 35780124 - 35780296
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  35780124 cagtgttgttttggaaaggggaaaatcgattgaaatttaaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 35780223  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    ||||||| |||| ||||||| ||| ||||||||||||| |||||||| |||||||||| |||||| |||||||    
T  35780224 attcaaactaatgaaagagagtttatttacttaccaaacagtgttgttttggaaagggaaaaaccgattgaaa 35780296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 47128452 - 47128280
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  47128452 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttcacaatttcaac 47128353  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| | |||||| ||||||||||||||||  |||||||    
T  47128352 attcaaattaatgaaagagagtttatttacttaccaaacaatgttgttttggaaaggggaaaactgattgaaa 47128280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 23510434 - 23510600
Alignment:
Q  6 ttgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaacattca 105  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  23510434 ttgttttggaaaggg-aaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagaaatttcaacattca 23510532  T
Q  106 aattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||| ||||||||||||||||  |||||||    
T  23510533 aattaatgaaagagagtttatttactaaccaaacagtgttgttttggaaaggggaaaactgattgaaa 23510600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 34769149 - 34769321
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| ||||||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  34769149 cagtgttgttttggaaattggaaaaccgattgaaatttgaaacagtgctgttttcaacattcaacaaatttctatcaatctctattttagcaatttcaac 34769248  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||| ||||  |||||||    
T  34769249 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggtaaactgattgaaa 34769321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 10431126 - 10431218
Alignment:
Q  72 ctatcaatctctattttagggatttcaacattcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaac 164  Q
    ||||||||||||||||||   |||||| ||||||||||||| ||||||| ||| ||||||||||||| |||||||| ||| |||||| |||||    
T  10431126 ctatcaatctctattttaacaatttcatcattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagggaaaaac 10431218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 47128498 - 47128457
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  47128498 caaatctctatcaatctctattttagcaatttcaacattcaa 47128457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 29940179 - 29940336
Alignment:
Q  6 ttgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaacattca 105  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  29940179 ttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattca 29940278  T
Q  106 aattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaa 163  Q
    ||||||| ||||||| ||| ||||||||||| | |||||||| |||||||||||||||    
T  29940279 aattaatgaaagagagtttatttacttaccagacagtgttgttttggaaaggggaaaa 29940336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 34716018 - 34715855
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34716018 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 34715919  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaac 164  Q
    |||||||||||| ||||| | ||| ||||||||||||| | |||||| |||||||||| |||||    
T  34715918 attcaaattaatgaaagaaagtttatttacttaccaaacaatgttgttttggaaagggaaaaac 34715855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 34693606 - 34693443
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  34693606 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaataaatctctatcaatctctattttagcaatttcaac 34693507  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaac 164  Q
    |||||||||||| ||||| | ||| ||||||||||||| | |||||| |||||||||| |||||    
T  34693506 attcaaattaatgaaagaaagtttatttacttaccaaacaatgttgttttggaaagggaaaaac 34693443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 29940128 - 29940169
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  29940128 caaatctctatcaatctctattttagcaatttcaacattcaa 29940169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 40445424 - 40445383
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  40445424 caaatctctatcaatctctattttagcaatttcaacattcaa 40445383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 45472679 - 45472543
Alignment:
Q  54 tcaacattcaacaaatctctatcaatctctattttagggatttcaacattcaaattaattaaagagattttctttacttaccaaatagtgttgtgttgga 153  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  45472679 tcaacattcaacaaatctctatcaatctctattttagagatttcaacattcaaattaatgaaagagagtttctttacttaccaaatagtgttgttttgga 45472580  T
Q  154 aaggggaaaaccaattgaaatactttgcttgttgaga 190  Q
    |||||||||||||||||||||||||||||||||||||    
T  45472579 aaggggaaaaccaattgaaatactttgcttgttgaga 45472543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 41878635 - 41878463
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  41878635 cagtgttgttttggaaaggggaaaaccgattgaaaattgaaacaatgttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaac 41878536  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| | |||||| ||||||||||||||||  |||||||    
T  41878535 attcaaattaatgaaagagagtttatttacttaccaaacaatgttgttttggaaaggggaaaactgattgaaa 41878463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 45472462 - 45472430
Alignment:
Q  237 atttgtgaatcggtggtgatggaatggatggaa 269  Q
    |||||||||||||||||||||||||||||||||    
T  45472462 atttgtgaatcggtggtgatggaatggatggaa 45472430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 19740817 - 19740989
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||    
T  19740817 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatctatctctattttaacaatttcaac 19740916  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| |||||||||| |||||  |||||||    
T  19740917 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaagggaaaaactgattgaaa 19740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 3954466 - 3954638
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  3954466 cagtgttgttttggaaaggggaaaaccgattgaaatttgaaacagggttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaac 3954565  T
Q  101 attcaaattaattaaagagattttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaa 173  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||| ||||||||  |||||||    
T  3954566 attcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaatgggaaaactgattgaaa 3954638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 8073662 - 8073799
Alignment:
Q  1 cagtattgttttggaaaggggaaaaccgattgaaatttgcaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagggatttcaac 100  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8073662 cagtgttgttttagaaaggggaaaaccgattgaaatttgaaacagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaac 8073761  T
Q  101 attcaaattaattaaagagattttctttacttaccaaa 138  Q
    |||||||||||| ||||||| ||| |||||||||||||    
T  8073762 attcaaattaatgaaagagagtttatttacttaccaaa 8073799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 8073616 - 8073657
Alignment:
Q  65 caaatctctatcaatctctattttagggatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  8073616 caaatctctatcaatctctattttagcaatttcaacattcaa 8073657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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