View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6556_low_1 (Length: 843)
Name: NF6556_low_1
Description: NF6556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6556_low_1 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 620
Target Start/End: Complemental strand, 49215099 - 49214490
Alignment:
| Q |
10 |
aagaaaatgtccaacgagtggcgtagatccggggattgaccctgcatcaaggatacacaatatattcacatggttaattgaagactttaccattctcgat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
49215099 |
aagaatatgtccaacgagtggcgtagatccggggattgaccctgcatcaaggatacacaatatattcacttagttaattgaagactttaccattctcgat |
49215000 |
T |
|
| Q |
110 |
gcagcggaaacgctcactcgtaccaacggatactgtcacatcccatcagagcaccttctatttctaatgggccatgaactagatctgaatcattataaag |
209 |
Q |
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| ||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||||||||| |
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| T |
49214999 |
gtagcgggaacactcactcgtaccaacagatactgtcacatcccagcagagcaccttctacttctagtggaccatgaactagatcagaatcattataaag |
49214900 |
T |
|
| Q |
210 |
gagtctataagaagtgataccatcannnnnnncattagatccggatagagaccaaaggttttgggtcttttatcatagaaatctttaataaaaatcatcc |
309 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49214899 |
gagtctataagaagtgataccatcatttttttcattaggtccggttagagaccaaaggttttgggtcttttatcatagatttctttaataaaaatcatcc |
49214800 |
T |
|
| Q |
310 |
gtattgaaaaatttgttagaagtaataaatttggttgaaattgtttttgattctatgtaatttgtgctatttgttaggttgcttaaaccgcctcccatct |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49214799 |
gtattgaaaaatttgttagaagtaataaatttggttgaaattgtttttgattctatgtaatttgtgctatttgttaggttgcttaaactgcctcccatct |
49214700 |
T |
|
| Q |
410 |
tctactttcctttttcatatttggtagatgccatacttatgacataattgcatgtttgacactgcctcttttaatggttgacctttctggatttattaat |
509 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49214699 |
tctactttcctttttcatatttggtagatgccacacttatgacataattgcatg-ttgacactgccttttttaatggttgacctttctggatttattaat |
49214601 |
T |
|
| Q |
510 |
gccagactcttcttcacaaaatcatatcatgacaaaatgatatcatcatgaagaaggccattggatcatatgaggttttgtgctctaagcattgcatggt |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49214600 |
gccagactcttcttcacaaaatcatatcatgacaaaatgatatcatcatgaagaaggccattagatcatatgaggttttgtgctctaagcattgcatggt |
49214501 |
T |
|
| Q |
610 |
tgcattgctaa |
620 |
Q |
| |
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||||||||||| |
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| T |
49214500 |
tgcattgctaa |
49214490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 632 - 824
Target Start/End: Complemental strand, 49214422 - 49214228
Alignment:
| Q |
632 |
aagtatcttgaaaggtttttaaactatggttgcaattgcatcgtgattcttaatagttccttgctgtgtatcatttgcgttactttaactgcagatttat |
731 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49214422 |
aagtatcttgaaaggtttttaaactatggttgcaattgcatcgtgattcttaatagttccttgctgtgtatcatttgcgttactttaactgcagatttat |
49214323 |
T |
|
| Q |
732 |
gcatattcacgtcaacagggagaagtttggcgctga---tttcnnnnnnngtgtagaccctgcctattgtagatttaatgcctcttgccacgtagg |
824 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
49214322 |
gcatattcacggcaacagggagaagtttggcgctgattttttttttttttgtgtgga-cctgcctattgtagatttaatgcctcttgccacgtagg |
49214228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 13231940 - 13232063
Alignment:
| Q |
149 |
atcccatcagagcaccttctatttctaatgggccatgaactagatctgaatcattataaaggagtctataagaagtgataccatcannnnnnncattaga |
248 |
Q |
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|||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13231940 |
atcccagcagagcaccttctatttctaatagcccatgaactagatcagaatcattataaaggagtctataagaagtgataccatcatttttttcattagg |
13232039 |
T |
|
| Q |
249 |
tccggatagagaccaaaggttttg |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
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| T |
13232040 |
tccggttagagaccaaaggttttg |
13232063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 15296885 - 15296817
Alignment:
| Q |
81 |
ggttaattgaagactttaccattctcgatgcagcggaaacgctcactcgtaccaacggatactgtcaca |
149 |
Q |
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|||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||| |
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| T |
15296885 |
ggttaattgaagactttaccattctcaatgcagtgggaacgctcactcgcaccaacggatactgtcaca |
15296817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 18353685 - 18353562
Alignment:
| Q |
149 |
atcccatcagagcaccttctatttctaatgggccatgaactagatctgaatcattataaaggagtctataagaagtgataccatcannnnnnncattaga |
248 |
Q |
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|
|||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18353685 |
atcccagcagagcaccttctatttctaatagcccatgaactagatcagaatcattataaaggagtctataagaagtgataccatcatttttttcattagg |
18353586 |
T |
|
| Q |
249 |
tccggatagagaccaaaggttttg |
272 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
18353585 |
tccggttagagaccaaaggttttg |
18353562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 534
Target Start/End: Original strand, 21608854 - 21608928
Alignment:
| Q |
460 |
catgtttgacactgcctcttttaatggttgacctttctggatttattaatgccagactcttcttcacaaaatcat |
534 |
Q |
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|||||||| || |||| ||||| ||||||| |||||||||||||||||||| || ||| ||||||||||||||| |
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| T |
21608854 |
catgtttggcattgccatttttattggttgatctttctggatttattaatgctaggctcatcttcacaaaatcat |
21608928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 1695 - 1571
Alignment:
| Q |
149 |
atcccatcagagcaccttctatttctaatgggccatgaactagatctgaatcattataaaggagtctataagaagtgataccatca-nnnnnnncattag |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1695 |
atcccagcagagcaccttctatttctaataggccatgaactagatcagaatcattagaaaggagtctataagaagtgataccatcattttttttcattag |
1596 |
T |
|
| Q |
248 |
atccggatagagaccaaaggttttg |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
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|
| T |
1595 |
gtccggttagagaccaaaggttttg |
1571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 82840 - 82964
Alignment:
| Q |
149 |
atcccatcagagcaccttctatttctaatgggccatgaactagatctgaatcattataaaggagtctataagaagtgataccatca-nnnnnnncattag |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
82840 |
atcccagcagagcaccttctatttctaataggccatgaactagatcagaatcattagaaaggagtctataagaagtgataccatcattttttttcattag |
82939 |
T |
|
| Q |
248 |
atccggatagagaccaaaggttttg |
272 |
Q |
| |
|
||||| |||||||||||||||||| |
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|
| T |
82940 |
gtccggttagagaccaaaggttttg |
82964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 4069 - 3986
Alignment:
| Q |
149 |
atcccatcagagcaccttctatttctaatgggccatgaactagatctgaatcattataaaggagtctataagaagtgataccat |
232 |
Q |
| |
|
|||||| |||||| ||||||| ||||||| |||||||||||||||| |||||||| | || || | |||||||||||| |||| |
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| T |
4069 |
atcccaccagagcgccttctacttctaataggccatgaactagatcagaatcattctcaacgaacccataagaagtgatcccat |
3986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 34666817 - 34666787
Alignment:
| Q |
80 |
tggttaattgaagactttaccattctcgatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
34666817 |
tggttaattgaagactttaccattctcgatg |
34666787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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