View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6557_high_1 (Length: 627)
Name: NF6557_high_1
Description: NF6557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6557_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 90 - 608
Target Start/End: Complemental strand, 39732809 - 39732291
Alignment:
| Q |
90 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc |
189 |
Q |
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| T |
39732809 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc |
39732710 |
T |
|
| Q |
190 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732709 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
39732610 |
T |
|
| Q |
290 |
taatgttgataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
389 |
Q |
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| T |
39732609 |
taatgttcataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
39732510 |
T |
|
| Q |
390 |
gatgcttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcttgagtttgtgaatatgattttgaagttcatgaacca |
489 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39732509 |
gatgtttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcatgagtttgtgaatatgattttgaagttcatgaacca |
39732410 |
T |
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| Q |
490 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
589 |
Q |
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| T |
39732409 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
39732310 |
T |
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| Q |
590 |
gactccgacacgaacacct |
608 |
Q |
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| T |
39732309 |
gactccgacacgaacacct |
39732291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 39732923 - 39732840
Alignment:
| Q |
11 |
cacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa |
94 |
Q |
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| T |
39732923 |
cacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa |
39732840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 134 - 325
Target Start/End: Original strand, 37476844 - 37477029
Alignment:
| Q |
134 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaatttaaatggagaa |
233 |
Q |
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||||||||| || | ||||||| |||||||||||||| |||||||| || ||| || |||||| | |||||||||||||||||| | |||| ||| |
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| T |
37476844 |
ataccatttgtaactcccaacaacaaatacatctgaatagagctttttcaaattcaccctagaaaagttgtcaattctccatgtgaatcttgatggtgaa |
37476943 |
T |
|
| Q |
234 |
ggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctactaatgttgataaaaataaatgaaaagagcaattaag |
325 |
Q |
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| T |
37476944 |
ggatcctcgacaggct------ccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag |
37477029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
| Q |
27 |
acacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
79 |
Q |
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| T |
39901566 |
acacaggaactaaaataacaactacaacaaaatcacttcctacaatagataga |
39901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
| Q |
134 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
221 |
Q |
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| T |
39868226 |
ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat |
39868313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 39868061 - 39868122
Alignment:
| Q |
18 |
gataaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
79 |
Q |
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| T |
39868061 |
gataaatacacataggaactaatataacagctacaacaaaatgacttccgccactagataga |
39868122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
| Q |
134 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
221 |
Q |
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||||||||||||||| ||||| ||||||||||||||| ||| || | || ||||| || ||||||||| |||||| ||||| ||||| |
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| T |
39901700 |
ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat |
39901787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
| Q |
134 |
ataccatttatagcccccaacatcaaatacatctgaacagag |
175 |
Q |
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| T |
39913661 |
ataccatttatagcccccagcttcaaatacatctgaatagag |
39913702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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