View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6557_low_3 (Length: 252)
Name: NF6557_low_3
Description: NF6557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6557_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 50200555 - 50200788
Alignment:
| Q |
4 |
aggattcattaaaatttttagcatttatatataaatggttttagaatgttaacaaggtttacaaacttaatcttacacacatataatttgaaaaggttca |
103 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50200555 |
aggattcattaaaaaatttagcatttatatataaatggttttagaatgttaacaaggtttacaaacttaatcttacacacatataatttgaaaaggttca |
50200654 |
T |
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| Q |
104 |
tgcttgtttacacattgaattaagtcttataatacatgtagaaggtat-atcttaattatctactgctaatatactatcaacaattaccaattaaacagc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50200655 |
tgcttgtttacacattgaattaagtcttataatacatgtagaaggtataatcttaattatctactgctaatatactatcaacaattaccaattaaacagc |
50200754 |
T |
|
| Q |
203 |
tagtaaattggaaatttcacgttcagcttagtat |
236 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
50200755 |
tagtaaattggaaatttcacgttcagcttagtat |
50200788 |
T |
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