View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6557_low_4 (Length: 229)

Name: NF6557_low_4
Description: NF6557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6557_low_4
NF6557_low_4
[»] chr2 (3 HSPs)
chr2 (16-229)||(9384618-9384831)
chr2 (140-192)||(25395444-25395497)
chr2 (135-179)||(41555295-41555340)
[»] chr8 (5 HSPs)
chr8 (137-191)||(44632188-44632242)
chr8 (155-213)||(3456803-3456860)
chr8 (136-180)||(1230675-1230720)
chr8 (127-191)||(3650513-3650578)
chr8 (132-180)||(13284279-13284328)
[»] chr7 (4 HSPs)
chr7 (135-191)||(23221393-23221450)
chr7 (135-181)||(36755016-36755062)
chr7 (135-181)||(36760813-36760859)
chr7 (135-191)||(22267582-22267639)
[»] chr1 (3 HSPs)
chr1 (135-191)||(30678816-30678873)
chr1 (140-192)||(34647720-34647772)
chr1 (157-205)||(35632923-35632971)
[»] chr5 (2 HSPs)
chr5 (132-191)||(37054272-37054332)
chr5 (135-172)||(35413314-35413351)
[»] chr6 (2 HSPs)
chr6 (134-196)||(29457181-29457244)
chr6 (135-191)||(10018401-10018457)
[»] chr4 (2 HSPs)
chr4 (125-191)||(41520945-41521012)
chr4 (136-179)||(48824931-48824975)
[»] chr3 (3 HSPs)
chr3 (139-179)||(26610508-26610548)
chr3 (149-177)||(32928605-32928633)
chr3 (128-191)||(47377352-47377416)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 9384618 - 9384831
Alignment:
Q  16 gtattggtattgatatgcatgactccagctttttcgaaacccaatctctaagtcacaaaagtaannnnnnnnatttaaatattacctaatgcaatcaaat 115  Q
    |||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  9384618 gtattggtattggtatacatgactccaactttttcaaaacccaatctctaagtcacaaaagtaattttatttatttaaatattacctaatgcaatcaaat 9384717  T
Q  116 gacgcattgaccgtcatcatgagtttaacccagttggtagaacaatgcataatatatataaggttcatggttcaaatttcaatcatcacaacaaaaatga 215  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||    
T  9384718 gacgcattgaccgtcatcatgagtttaactcaattggtagaacaatgcataatatatgtaaggttcagggttcaaactccaatcatcacaacaaaaatga 9384817  T
Q  216 cgcattggctaatt 229  Q
    ||||||||||||||    
T  9384818 cgcattggctaatt 9384831  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 25395497 - 25395444
Alignment:
Q  140 ttaacccagttggtag-aacaatgcataatatatataaggttcatggttcaaat 192  Q
    ||||| |||||||||| |||||||||||||||||  |||||||| |||||||||    
T  25395497 ttaactcagttggtaggaacaatgcataatatatgcaaggttcaaggttcaaat 25395444  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 41555295 - 41555340
Alignment:
Q  135 tgagtttaacccagttggtag-aacaatgcataatatatataaggt 179  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||    
T  41555295 tgagtttaactcagttggtaggaacaatgcataatacatataaggt 41555340  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 44632242 - 44632188
Alignment:
Q  137 agtttaacccagttggtagaacaatgcataatatatataaggttcatggttcaaa 191  Q
    |||||||| |||||||||  |||||||||||||||||||||||||  ||||||||    
T  44632242 agtttaactcagttggtatgacaatgcataatatatataaggttcggggttcaaa 44632188  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 3456860 - 3456803
Alignment:
Q  155 gaacaatgcataatatatataaggttcatggttcaaatttcaatcatcacaacaaaaat 213  Q
    |||||||||||||||||| ||||||||  |||||||| ||||| |||||||| ||||||    
T  3456860 gaacaatgcataatatatgtaaggttc-gggttcaaacttcaaccatcacaaaaaaaat 3456803  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 1230720 - 1230675
Alignment:
Q  136 gagtttaacccagttggtag-aacaatgcataatatatataaggtt 180  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||    
T  1230720 gagtttaactcagttggtaggaacaatgcataatatatgtaaggtt 1230675  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 3650513 - 3650578
Alignment:
Q  127 cgtcatcatgagtttaacccagttggtagaacaa-tgcataatatatataaggttcatggttcaaa 191  Q
    ||||||| |||| ||||| |||||||||||| || |||||||||||| ||||||||  ||||||||    
T  3650513 cgtcatcgtgagcttaactcagttggtagaaaaaatgcataatatatgtaaggttcggggttcaaa 3650578  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 13284328 - 13284279
Alignment:
Q  132 tcatgagtttaacccagttggta-gaacaatgcataatatatataaggtt 180  Q
    ||||||||||||| |||||| || |||||||| |||||||||||||||||    
T  13284328 tcatgagtttaactcagttgatatgaacaatgtataatatatataaggtt 13284279  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 23221393 - 23221450
Alignment:
Q  135 tgagtttaacccagttggtaga-acaatgcataatatatataaggttcatggttcaaa 191  Q
    |||| ||||| ||||||||||| |||||||||||||||| |||||||| |||||||||    
T  23221393 tgagcttaactcagttggtagagacaatgcataatatatgtaaggttcgtggttcaaa 23221450  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 36755016 - 36755062
Alignment:
Q  135 tgagtttaacccagttggtagaacaatgcataatatatataaggttc 181  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||    
T  36755016 tgagcttaactcagttggtaggacaatgcataatatatgtaaggttc 36755062  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 36760813 - 36760859
Alignment:
Q  135 tgagtttaacccagttggtagaacaatgcataatatatataaggttc 181  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||    
T  36760813 tgagcttaactcagttggtaggacaatgcataatatatgtaaggttc 36760859  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 22267582 - 22267639
Alignment:
Q  135 tgagtttaacccagttggtaga-acaatgcataatatatataaggttcatggttcaaa 191  Q
    |||||||||| ||||||||||| |||||||||||||||| |||| |||| | ||||||    
T  22267582 tgagtttaactcagttggtagagacaatgcataatatatgtaagattcaggattcaaa 22267639  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 30678873 - 30678816
Alignment:
Q  135 tgagtttaacccagttggtaga-acaatgcataatatatataaggttcatggttcaaa 191  Q
    |||| ||||| ||||||||||  |||||||||||||||| ||||||||||||||||||    
T  30678873 tgagcttaactcagttggtagggacaatgcataatatatgtaaggttcatggttcaaa 30678816  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 34647772 - 34647720
Alignment:
Q  140 ttaacccagttggtagaacaatgcataatatatataaggttcatggttcaaat 192  Q
    ||||| |||||||||||||||| ||||||||||  ||| | ||||||||||||    
T  34647772 ttaactcagttggtagaacaatacataatatatgcaagatccatggttcaaat 34647720  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 35632923 - 35632971
Alignment:
Q  157 acaatgcataatatatataaggttcatggttcaaatttcaatcatcaca 205  Q
    ||||||||||||||||||||||||   ||||||||||||  ||||||||    
T  35632923 acaatgcataatatatataaggtttgaggttcaaatttcggtcatcaca 35632971  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 37054332 - 37054272
Alignment:
Q  132 tcatgagtttaacccagttggtaga-acaatgcataatatatataaggttcatggttcaaa 191  Q
    ||||||||||| | ||||||||||  |||||||||||||||||||||||||  ||||||||    
T  37054332 tcatgagtttagctcagttggtagggacaatgcataatatatataaggttcggggttcaaa 37054272  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 35413351 - 35413314
Alignment:
Q  135 tgagtttaacccagttggtagaacaatgcataatatat 172  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  35413351 tgagcttaactcagttggtagaacaatgcataatatat 35413314  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 29457181 - 29457244
Alignment:
Q  134 atgagtttaacccagttggtag-aacaatgcataatatatataaggttcatggttcaaatttca 196  Q
    ||||||||| | |||||||||| || ||||||||||||||||||||||  ||||||||| ||||    
T  29457181 atgagtttagctcagttggtaggaaaaatgcataatatatataaggtttgtggttcaaacttca 29457244  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 10018401 - 10018457
Alignment:
Q  135 tgagtttaacccagttggtagaacaatgcataatatatataaggttcatggttcaaa 191  Q
    |||||||| | |||||||||| | |||||||||||||| ||||||||  ||||||||    
T  10018401 tgagtttagctcagttggtaggataatgcataatatatgtaaggttcggggttcaaa 10018457  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 41520945 - 41521012
Alignment:
Q  125 accgtcatcatgagtttaacccagttggtaga-acaatgcataatatatataaggttcatggttcaaa 191  Q
    |||||| |||| || ||||| ||||||||||| ||||||||||||||||  |||||||| ||||||||    
T  41520945 accgtcctcataagcttaactcagttggtagagacaatgcataatatatgcaaggttcaaggttcaaa 41521012  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 48824975 - 48824931
Alignment:
Q  136 gagtttaacccagttggta-gaacaatgcataatatatataaggt 179  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||    
T  48824975 gagtttaactcagttggtaagaacagtgcataatatatataaggt 48824931  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 26610548 - 26610508
Alignment:
Q  139 tttaacccagttggtagaacaatgcataatatatataaggt 179  Q
    |||||| |||||||||| |||||||||||||||| ||||||    
T  26610548 tttaactcagttggtaggacaatgcataatatatgtaaggt 26610508  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 32928633 - 32928605
Alignment:
Q  149 ttggtagaacaatgcataatatatataag 177  Q
    |||||||||||||||||||||||||||||    
T  32928633 ttggtagaacaatgcataatatatataag 32928605  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 47377416 - 47377352
Alignment:
Q  128 gtcatcatgagtttaacccagttggta-gaacaatgcataatatatataaggttcatggttcaaa 191  Q
    |||||| |||| ||||| ||||||||| | ||||||||||||||||| |||||||  ||||||||    
T  47377416 gtcatcgtgagcttaactcagttggtaaggacaatgcataatatatacaaggttcgaggttcaaa 47377352  T

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