View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6558_high_4 (Length: 289)
Name: NF6558_high_4
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6558_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 43395745 - 43396028
Alignment:
| Q |
1 |
aggaatcagtgatgagatactatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcctgca |
100 |
Q |
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| T |
43395745 |
aggaatcagtgatgagatactatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcctgca |
43395844 |
T |
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| Q |
101 |
actgcagtacacaaatggttttccaacatcctcaaaccc------------aacaataacaataacaatagccccagtaacacgccaccaccttctccag |
188 |
Q |
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| T |
43395845 |
actgcagtacacaaatggttttccaacatcctcaaacccaacaataacaataacaataacaataacaatagcccaagtaacacgccaccaccttctccag |
43395944 |
T |
|
| Q |
189 |
attctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatcttcaccctctcctgcacctcagccgcagggaatcc |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43395945 |
attctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatcttcaccctctcctgcacctcagccacagggaatcc |
43396028 |
T |
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