View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6558_high_6 (Length: 282)
Name: NF6558_high_6
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6558_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 26697623 - 26697369
Alignment:
| Q |
12 |
tcatcatcaatcttcataaaaaaatccaacnnnnnnnnnnnnctagaaaacacaa--tcaaattaacccaaaccctcatcaaacccaaaattctataatt |
109 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26697623 |
tcatcatcaatcttcataaaaaaatccaacaacaaaaaaaaactagaaaacacaaaatcaaattaacccaaaccctcatcaaaccctaaattctataatt |
26697524 |
T |
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| Q |
110 |
tcttctaattaaccaaacctcattatacaacaaacctacaatcacaaatcaaaaccatacaataaaagaaatcaattttttccaataccgccacttctct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26697523 |
tcttctaattaaccaaacctcattatacaacaaacccacaatcacaaatcaaaaccatacaataaaagaaatcaattttttccaacaccgccacttctct |
26697424 |
T |
|
| Q |
210 |
cttcgcaaaattccagaaatttcaacctcgatttagttaaatttcatgttcatac |
264 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26697423 |
cttcacaaaattccagaaatttcaacctcgatttagttaaatttcatgttcatac |
26697369 |
T |
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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 44276497 - 44276613
Alignment:
| Q |
65 |
aatcaaattaacccaaaccctcatcaaacccaaaattctataattt-cttctaattaaccaaacctcattatacaacaaacctacaatcacaaatcaaaa |
163 |
Q |
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|||||||||||||| |||| |||||||||| |||||| ||||| |||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |
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| T |
44276497 |
aatcaaattaacccttacccccatcaaaccctaaattcaataatggacttctaattaaccaaaccccattaaaccacaaacccacaatcacaaatcaaaa |
44276596 |
T |
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| Q |
164 |
ccatacaataaaagaaa |
180 |
Q |
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| T |
44276597 |
ccatacaataaaagaaa |
44276613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 42431313 - 42431419
Alignment:
| Q |
86 |
catcaaacccaaaattctataatttcttctaattaa-ccaaacctcattatacaacaaacctacaatcacaaatcaaaaccatacaa-taaaagaaatca |
183 |
Q |
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|||||||||| |||||| |||||||||||||||||| ||||||| ||||| || ||||||| | ||||||||||||||||||||||| |||| |||||| |
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| T |
42431313 |
catcaaaccctaaattcaataatttcttctaattaaaccaaaccccattaaaccacaaacccaaaatcacaaatcaaaaccatacaagaaaaataaatca |
42431412 |
T |
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| Q |
184 |
atttttt |
190 |
Q |
| |
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||||||| |
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| T |
42431413 |
atttttt |
42431419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 31967439 - 31967521
Alignment:
| Q |
54 |
ctagaaaacacaa--tcaaattaacccaaaccctcatcaaacccaaaattctataatttcttctaattaaccaaacctcatta |
134 |
Q |
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| T |
31967439 |
ctagaaaacacaaaatcaaattaacccaaaaccccatcaaaccctaatttcaataatttcttctaattaaccaaacttcatta |
31967521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 10167670 - 10167775
Alignment:
| Q |
110 |
tcttctaattaaccaaacctcattatacaacaaacctacaatcacaaatcaaaaccatacaataaaagaaatcaattttttc--caataccgccacttct |
207 |
Q |
| |
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|||||||||||| |||||| |||| || | ||||| | ||||||||||||||| |||||| || || ||||||||||||| || |||||||||||| |
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| T |
10167670 |
tcttctaattaatcaaaccctattaaaccataaacccaaaatcacaaatcaaaatcatacagtagaaaaaatcaatttttttttcaccaccgccacttct |
10167769 |
T |
|
| Q |
208 |
ctcttc |
213 |
Q |
| |
|
|||||| |
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|
| T |
10167770 |
ctcttc |
10167775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 34469201 - 34469263
Alignment:
| Q |
110 |
tcttctaattaaccaaacctcattatacaacaaacctacaatcacaaatcaaaaccatacaat |
172 |
Q |
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|||||||||||| ||||||| || | || ||||||| | |||||||||||||||||||||||| |
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| T |
34469201 |
tcttctaattaatcaaaccttatgaaaccacaaacccaaaatcacaaatcaaaaccatacaat |
34469263 |
T |
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