View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6558_low_2 (Length: 425)
Name: NF6558_low_2
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6558_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 41866707 - 41867123
Alignment:
| Q |
1 |
ttcatttttacccttaaataaccacaaagcatatccataagcaccatgtgtttttatttctgcaattaaaaactcttgttttataagcttaagcaatttt |
100 |
Q |
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| T |
41866707 |
ttcatttttacccttaaataaccacaaagcatatccataagcaccatgtgtttttatttctgcaattaaaaactcttgttttataagcttaagcaatttt |
41866806 |
T |
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| Q |
101 |
tattacatgattttgctgatcaaacgttgatagatagtgtagttatttatttatgaatcaaagtatttcttnnnnnnngactaatggtattagaacaata |
200 |
Q |
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| T |
41866807 |
tattacatgattttgttgatcaaacgttgatagatagtgtagttatttatttatgaatcaaagtatttcttaaaaaaagactaatggtattagaacaata |
41866906 |
T |
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| Q |
201 |
aaacttatgatattttgatcgctttaataaaaaagtagacatagataaaatgatgtatgagaaactaaaattaccaaacacattagtttgtttatattgt |
300 |
Q |
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| T |
41866907 |
aaacttatgatattttgatcgctttaataaaaaagtagacatagataaaatgatgtatgataaactaaaattgccaaacacattagtttgtttatattgt |
41867006 |
T |
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| Q |
301 |
cttgcaatgaccaataatttattcag-nnnnnnnntacaatggtcaataattatttagaaaaattagcaaatttaattcatcaacaaacactttttccaa |
399 |
Q |
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| T |
41867007 |
cttgcaatgaccaataatttattcagaaaaaaaaatacaatggccaataattatttagaaaaattagcaaatttaattcatcatcaaacactttttccaa |
41867106 |
T |
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| Q |
400 |
attttctcgagaataat |
416 |
Q |
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| T |
41867107 |
actttctcgagaataat |
41867123 |
T |
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