View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6558_low_3 (Length: 415)
Name: NF6558_low_3
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6558_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 30877623 - 30877223
Alignment:
| Q |
1 |
aaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30877623 |
aaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacatcat |
30877524 |
T |
|
| Q |
101 |
cctttctttaatcattgagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggtaagtacttatcacattaatgcttaatt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877523 |
cctttctttaatcattcagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggtaagtacttatcacattaatgcttaatt |
30877424 |
T |
|
| Q |
201 |
attttttaataaccaattatattggtgtgaagtatccaccaaccaatatccacaatgaaatctaactagtgatgtttagtgggctctcccctcctaaccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30877423 |
attttttaataaccaattatattggtgtgaagtatccaccaaccaatatccacaatgaaagctaactagtgatgtttagtgggctctcccctcctaaccc |
30877324 |
T |
|
| Q |
301 |
aagtttttcctttacacaaggatcgagcccgaaactttgcttaaaggatccgagtcagatatcatataaatgcttatgtataactatttctataacagaa |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877323 |
aagtttttcctttacacatggatcgagcccgaaactttgcttaaaggatccgagtcagatatcatataaatgcttatgtataactatttctataacagaa |
30877224 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
30877223 |
g |
30877223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39332788 - 39332708
Alignment:
| Q |
1 |
aaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaa |
81 |
Q |
| |
|
|||| ||||||||||| || |||||| ||||||||||||| |||||| |||| |||||||| ||| ||||||||||||| |
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| T |
39332788 |
aaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgttattccaggggctaataaggttagttcaa |
39332708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 37053519 - 37053560
Alignment:
| Q |
360 |
tatcatataaatgcttatgtata-actatttctataacagaa |
400 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||| |
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| T |
37053519 |
tatcatataagtgcttatgtatagactatttctataacagaa |
37053560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 29269821 - 29269863
Alignment:
| Q |
360 |
tatcatataaatgcttatgtat-aactatttctataacagaag |
401 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
29269821 |
tatcatataaatgcttgtgtataaactatttctataacagaag |
29269863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 37063217 - 37063181
Alignment:
| Q |
362 |
tcatataaatgcttatgtat-aactatttctataaca |
397 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
37063217 |
tcatataaatgcttatgtataaactatttctataaca |
37063181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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