View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6558_low_4 (Length: 304)

Name: NF6558_low_4
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6558_low_4
NF6558_low_4
[»] chr4 (1 HSPs)
chr4 (1-292)||(27774748-27775039)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27775039 - 27774748
Alignment:
Q  1 atcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatcttctttgttttcaattatatcaaacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27775039 atcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatcttctttgttttcaattatatcaaacag 27774940  T
Q  101 acatgctattgttgttttttactacaaattataacatttgcatctactctaagatatttttccttacattgatttttatattgcagatgctgagggatga 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27774939 acatgctattgttgttttttactacaaatgataacatttgcatctactctaagatatttttccttacattgatttttatattgcagatgctgagggatga 27774840  T
Q  201 ctcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctactcctgcaaccgatgatg 292  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27774839 ctcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctactcctgcaaccaatgatg 27774748  T

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