View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6558_low_5 (Length: 293)
Name: NF6558_low_5
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6558_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 3361973 - 3362238
Alignment:
| Q |
19 |
gttacaatgactcaagattcgtttgaaaacatgatctccaacagcccttttcttgaaaacttgatgttgtttaaccttgacggtttcagccaaattaata |
118 |
Q |
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| T |
3361973 |
gttacaatgactcaagattcttttgaaaacatgatctccaacagcccttttcttgaaaaattgatgttgtttaaccttgatggtttcagccaaattaata |
3362072 |
T |
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| Q |
119 |
tccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgattagttgagttaacgatgtgtttaga |
218 |
Q |
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| T |
3362073 |
tccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgattagttgagttaacgatgtatttaga |
3362172 |
T |
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| Q |
219 |
ctatggatgctatctagttaaattgtgtggatgctctagcaatttgcttcgatttttcgttcatct |
284 |
Q |
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| T |
3362173 |
ctatggatgcaatctagttaaattgcgtggatgctctagcaatttgcttcgatttttcgttcatct |
3362238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 2006781 - 2006883
Alignment:
| Q |
94 |
cttgacggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgat |
193 |
Q |
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| T |
2006781 |
cttgatggtttcacccaaataaacattcacgcaccaaatcttaaggttttggatatctgtggtaaatttgaggatattagctttgacaacactttccaat |
2006880 |
T |
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| Q |
194 |
tag |
196 |
Q |
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||| |
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| T |
2006881 |
tag |
2006883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 2012333 - 2012367
Alignment:
| Q |
153 |
tggtgaatttgaggatattagctttgaaaacactt |
187 |
Q |
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| T |
2012333 |
tggtaaatttgaggatattagctttgaaaacactt |
2012367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 3379072 - 3379172
Alignment:
| Q |
95 |
ttgacggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgatt |
194 |
Q |
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|||| ||||||| ||||||||| |||| |||||||||||||||| | | || ||||| ||||||||||||||| ||||| ||||| ||||| ||| |
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| T |
3379072 |
ttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaatttccaatt |
3379171 |
T |
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| Q |
195 |
a |
195 |
Q |
| |
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| |
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|
| T |
3379172 |
a |
3379172 |
T |
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