View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6558_low_9 (Length: 258)
Name: NF6558_low_9
Description: NF6558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6558_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 18925032 - 18924797
Alignment:
| Q |
25 |
tcaaataacaaagtgcggaacaatagttatttgttcaaattccgctaagatatagcattataacatatata--gctatagctactatttgacaatactgc |
122 |
Q |
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| T |
18925032 |
tcaaataacaaagtgcggaacaatagttatttgttcaaattccgctaagatatagcattataacatatatatagctatagctactatttgacaatactgc |
18924933 |
T |
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| Q |
123 |
tcaatgctcattataatgataaaccattttaacgctactaagatgattcggaccaagacttcaggttactagttgggtaattttttaatttaaatacatg |
222 |
Q |
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| T |
18924932 |
tcaatggtcattataatgataaaccattttaatgctactaagatgattcggaccaagacttcaggttactagttgggtaatttttgaagttaaatacatg |
18924833 |
T |
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| Q |
223 |
tttcgcagtaagctccaaaaatataaaactcttagt |
258 |
Q |
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| T |
18924832 |
tttcgcagtaagctccgaaaatataaaactcttagt |
18924797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18925073 - 18925044
Alignment:
| Q |
1 |
tcatcatatcaaatagaggtttgttcaaat |
30 |
Q |
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| T |
18925073 |
tcatcatatcaaatagaggtttgttcaaat |
18925044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 49983178 - 49983146
Alignment:
| Q |
39 |
gcggaacaatagttatttgttcaaattccgcta |
71 |
Q |
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| T |
49983178 |
gcggaacaatagtaatttgttcaaattccgcta |
49983146 |
T |
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