View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_high_11 (Length: 450)
Name: NF6560_high_11
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 62 - 434
Target Start/End: Original strand, 19137101 - 19137473
Alignment:
| Q |
62 |
agggatattaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcgacgagttcatccaatgattccggttgaggat |
161 |
Q |
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| T |
19137101 |
agggatactaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcaacgagttcatccaatgattccggttgaggat |
19137200 |
T |
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| Q |
162 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
261 |
Q |
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| T |
19137201 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
19137300 |
T |
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| Q |
262 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacagggcgaaggtcttgt |
361 |
Q |
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| T |
19137301 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacggggcgaaggtcttgt |
19137400 |
T |
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| Q |
362 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
434 |
Q |
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| T |
19137401 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
19137473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 51687418 - 51687326
Alignment:
| Q |
121 |
gtaataatcgacgagttcatccaatgattccggttgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagc |
213 |
Q |
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| T |
51687418 |
gtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatgttcgaaaaggacaacctcacaagc |
51687326 |
T |
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