View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_high_15 (Length: 411)
Name: NF6560_high_15
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 19137450 - 19137860
Alignment:
| Q |
1 |
tgttgttgttgttgtaataggtgaaggtgttccatttcttgagcactgatttaagctttgttagttttgcaacttttgccatgttggaaagatgaagaaa |
100 |
Q |
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| T |
19137450 |
tgttgttgttgttgtaataggtgaaggtgttccatttcttgagcactgatttaagctttgctagttttgcaacttttgccatgttggaaagttgaagaaa |
19137549 |
T |
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| Q |
101 |
caaagaggatataggtgtatgtgagaaagtgtaaggaaggttcggttttggtttgtataaaaaggtagggagtagggtgaaatggtaataagcacctaat |
200 |
Q |
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| T |
19137550 |
caaagaggatataggtgtatgtgagaaagtgtagggaaggttcggttttggtttgtataaaaaggtagggagaagggtgaaatggtaataagcacctaat |
19137649 |
T |
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| Q |
201 |
taagaaaaagatagtggcctaaacgatagttgtgtttttgtggcatttggactttagtgggtatgaattttgaaccgttgtttggtttgtctttgtcaac |
300 |
Q |
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| T |
19137650 |
taagaaaaagatagtggcctaaacgatagttgtgtttttgtggcctttggactttagtgggtgtgaattttgaaccgttgtttggtttgtctttgtcaac |
19137749 |
T |
|
| Q |
301 |
ctttatatatttttctctctattattattaggtgtctctagagctctttaggaagttcttttctataattaatgaataaatagtannnnnnnnggtaact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19137750 |
ctttatatatttttctctctattattattaggtgtctctcgagctctttaggaagttcttttctataattaatgaataaatagtattttttttggtaact |
19137849 |
T |
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| Q |
401 |
aatgtttaggt |
411 |
Q |
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| T |
19137850 |
aatgtttaggt |
19137860 |
T |
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