View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6560_high_18 (Length: 388)
Name: NF6560_high_18
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_18 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 31322933 - 31322553
Alignment:
| Q |
8 |
cgaataatatactaatcaaagtagaaatagaccagttcttttataagcttcaaattcaaataattgtaaacggtttatactcttaagtagttatcgaaga |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322933 |
cgaatattatactaatcaaagtagaaatagaccagttcttttataagctttatattcaaataattgtaaacggtttatactcttaagtagttatcgaaga |
31322834 |
T |
|
| Q |
108 |
tatatttcaacatataagttttttcattttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcattggaaaatcggtg |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
31322833 |
tatatttcaacatataagttgtttcattttgttactatgttattggtacaaagttttcactgtcgtttaccagtaactaatcttcattggaaaatcggtg |
31322734 |
T |
|
| Q |
208 |
aggtacataaggtggattttctcctttcaatcgagttttctccatacgcaagagatgatgattgaacccttaaccagttgctgaaggtgtccaaatccct |
307 |
Q |
| |
|
||||| ||||||||| || || ||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
31322733 |
aggtatataaggtgggttctcccctttcaatcgagttttctccttacacaggagatgatgattgaacccttaaccacttgctgaaggtgttcaaatccct |
31322634 |
T |
|
| Q |
308 |
tatcacttggatcaatccattattggtaggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatt |
388 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322633 |
tatcacttggatcaattcattattgataggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatt |
31322553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 42563705 - 42563765
Alignment:
| Q |
134 |
ttttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcat |
194 |
Q |
| |
|
|||| ||| |||| || |||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
42563705 |
tttttttactatgatattgatacaaagtttttaccctcgtttaacagtgattaatcttcat |
42563765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 17833486 - 17833437
Alignment:
| Q |
285 |
ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt |
334 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
17833486 |
ttgcttaaggggtccaaatcccttaccacttggataaatccattgttggt |
17833437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 21612240 - 21612278
Alignment:
| Q |
297 |
tccaaatcccttatcacttggatcaatccattattggta |
335 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
21612240 |
tccaaatctcttatcacttggatcaatccattgttggta |
21612278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 47894 - 47845
Alignment:
| Q |
285 |
ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt |
334 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
47894 |
ttgcttaaggtgcccaaataccttatcacttggaccaatccattgttggt |
47845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University