View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_high_20 (Length: 365)
Name: NF6560_high_20
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 37 - 349
Target Start/End: Original strand, 1373485 - 1373794
Alignment:
| Q |
37 |
ctcgatcacttcacatttaaattgtgtgttaagtgtttaagggtgtttgtgtgttgaatgtgattaaattttgaatgaattacacacaatttcgtttcct |
136 |
Q |
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| T |
1373485 |
ctcgatcacttcacatttaaactgtgtgttaagcatttaagggtgtttgtgtgttgaatgtgattaaattttgaatgaattacacacaatttcgcttcct |
1373584 |
T |
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| Q |
137 |
actactgcatcataattcccaatcgtggtatatttttgtaactcatgaaccgaagtgaacgagacgtaacttatgatgaaggtattttcgaaagtttaag |
236 |
Q |
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| T |
1373585 |
actactgcatcataattcccaatcgtggtatatttttgtaactcatgaaccgaagtgaacgagacgtaac---tgatgaaggtattttcaaaagtttaag |
1373681 |
T |
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| Q |
237 |
atgctagtaagcggttgaaggtgcctaaaaatcaattttcaaaattaaacaagacaactagaaaataagcccaatagattagctagtgcatttatcactg |
336 |
Q |
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| T |
1373682 |
atgctggtaagcggttgaaggtgcctaaaaatcaattttcaaaattaaatgagacaactagcaaataagcccaatagattagctagtgcatttatcacta |
1373781 |
T |
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| Q |
337 |
acccgcattgcca |
349 |
Q |
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| T |
1373782 |
acccgcatggcca |
1373794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 340
Target Start/End: Original strand, 1375020 - 1375277
Alignment:
| Q |
85 |
gtgtgttgaatgtgattaaattttgaatgaattacacacaatttcgtttcctactactgcatcataattcccaatcgtggtatatttttgtaactcatga |
184 |
Q |
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| T |
1375020 |
gtgtgttgaatgagattaaattttgaatgaattatggacaattcagcttctta-----gcatcctaatttccaatcgtggtatctttttgtagctcatga |
1375114 |
T |
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| Q |
185 |
accgaagtgaacgagacgtaacttatgatgaag--------gtattttcgaaagtttaagatgctagtaagcggttgaaggtgcctaaaaatcaattttc |
276 |
Q |
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| T |
1375115 |
accgaagataacgagacataactcctggtggagtcgtggaggtgttttcgatagtttaaggtgc--gtaagcaattgaaggtgcctaaaaatcaattttc |
1375212 |
T |
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| Q |
277 |
aaaattaaacaagac-aactagaaaataagcccaatagattagctagtgcatttatcactgaccc |
340 |
Q |
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| T |
1375213 |
aagataaagtgagaccaactagcaaataagcccaatagatttgctagtgcgtttaacattgaccc |
1375277 |
T |
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