View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_high_23 (Length: 329)
Name: NF6560_high_23
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 29852692 - 29852394
Alignment:
| Q |
13 |
aaaattgagcattaaaacttgttttaggagattaaaacaaagttatataatatatcccatttatgcatacgggtaaattggtacattccaattgtctcga |
112 |
Q |
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| T |
29852692 |
aaaattgagcattaaaacttattttaggagattaaaacaaagttatataatatatcccatttatgcatacgggtaaattggtacattccaattgtctcga |
29852593 |
T |
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| Q |
113 |
tacagtttaattacagttaagtgatatctaacaaatattcaaaatgaacacaaaatcatccttacccgtagtacaaaaaatcaacacatagaatgtgcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29852592 |
tacagtttaattacagttaagtgatatctaacaaatattcaaaatgaacacaaaatcatccttacccgtagtacaaaaaatcaacacatagaatgtgcaa |
29852493 |
T |
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| Q |
213 |
ttatacaatgaatgtaagtaaaaataaccaaaatacaaaataaaagtcttcaaatgtgttttaacttcaagtgacgtcagggttgatgaggaccatgtca |
312 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29852492 |
ttacacaatgaatgtaagt--aaataaccaaaatacaaaataaaagtcttcaaatgtgttttaacttcaagtgacgtcagggttgatgaggaccatgtca |
29852395 |
T |
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