View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_high_4 (Length: 542)
Name: NF6560_high_4
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 276 - 494
Target Start/End: Complemental strand, 26546290 - 26546074
Alignment:
| Q |
276 |
catgtatgctaatgagtatgctattgtgattctttgtcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactcc |
375 |
Q |
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| T |
26546290 |
catgtatgctaatgagtatgctattgtgattctttgtcttctctctcaaactttactactaagacctaaaacttcatctactctttcgcacatcaactcc |
26546191 |
T |
|
| Q |
376 |
acttgttctccatatgcacttttaacgtttccgaaactcatgtttctaccttgttatccctaannnnnnnnggtgttatatgtttctcgtaattagtgaa |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
26546190 |
acttgttctccatatgcacttttaacgtttccgaaactcatgtttctaccttgttatccctaatattttttggtgt--tatgtttctcgtaattagtgaa |
26546093 |
T |
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| Q |
476 |
tgtttatgaaacaaagccc |
494 |
Q |
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||||| ||||||||||||| |
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| T |
26546092 |
tgtttctgaaacaaagccc |
26546074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 312 - 494
Target Start/End: Complemental strand, 26551984 - 26551804
Alignment:
| Q |
312 |
tcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactccacttgttctccatatgcacttttaacgtttccgaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26551984 |
tcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactccacttgttctccatatgcacttttaacgtttcggaaa |
26551885 |
T |
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| Q |
412 |
ctcatgtttctaccttgttatccctaannnnnnnnggtgttatatgtttctcgtaattagtgaatgtttatgaaacaaagccc |
494 |
Q |
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| T |
26551884 |
ctcatgtttctaccttgttatccctaatattttttggtgt--tatgtttctcgtaattagtcaatgtttctgaaacaaagccc |
26551804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 26546541 - 26546389
Alignment:
| Q |
25 |
aattaatgtgatcaaaatacacgtgcctacaaatctataatatgttaacgctcaatttattgattaagtctgcaatggatcaaacttatatgtcgatctg |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26546541 |
aattaatgtgatcaaaatacacgtgcctacaaatctataacctgttgacgctcaatttattgatcaagtctgcaatggatcaaacttatatgtcgatctg |
26546442 |
T |
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| Q |
125 |
aaacaaacgaactcataattagacgagaacatgaacaacgttgaaccacgacg |
177 |
Q |
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| T |
26546441 |
aaacaaacgaactcataattaaacgagaacatgaacaacgttgaaccacgacg |
26546389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 26552555 - 26552406
Alignment:
| Q |
28 |
taatgtgatcaaaatacacgtgcctacaaatctataatatgttaacgctcaatttattgattaagtctgcaatggatcaaacttatatgtcgatctgaaa |
127 |
Q |
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|||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26552555 |
taatgtgaccaaaatacacgtgcctacacatctataacctgttgacgctcaatttattgattaagtctgcaatggatcaaacttatatttcgatctgaac |
26552456 |
T |
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| Q |
128 |
caaacgaactcataattagacgagaacatgaacaacgttgaaccacgacg |
177 |
Q |
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|||| ||| ||||||||||| ||||||||||||| |||| |||| |||| |
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| T |
26552455 |
caaatgaatccataattagaccagaacatgaacaatgttgcaccaagacg |
26552406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 26552296 - 26552257
Alignment:
| Q |
276 |
catgtatgctaatgagtatgctattgtgattctttgtctt |
315 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
26552296 |
catgtatgctaatgagtatgctattgtgattatttgtctt |
26552257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 415
Target Start/End: Original strand, 35037312 - 35037413
Alignment:
| Q |
308 |
tttgtcttctctctcgaactttactactcagacctaaaacttcatctactctttcgcacatcaactccacttgttctccatatgcacttttaacgtttcc |
407 |
Q |
| |
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|||||||||||||| |||||| | ||||||| |||||||| | |||||||||||||||||||||| ||||||||| || | |||| ||||||| |
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| T |
35037312 |
tttgtcttctctcttgaacttcatcactcagatctaaaactcc------tctttcgcacatcaactccactcgttctccatctgaaatttttacgtttct |
35037405 |
T |
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| Q |
408 |
gaaactca |
415 |
Q |
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|||||||| |
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| T |
35037406 |
gaaactca |
35037413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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