View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_high_7 (Length: 486)
Name: NF6560_high_7
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 31594025 - 31594479
Alignment:
| Q |
1 |
gatcatccaacaaagacataactctccatccatgtataagtgtttgcacaaatcaaaaggaacaagccatagttggaaatgaatcaaccaccaccagaga |
100 |
Q |
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| T |
31594025 |
gatcatccaacaaagacataactctccatccatgtataagtgtttgcacaaatcaaaaggaacaagccatacttggaaatgaatcaaccaccaccagaga |
31594124 |
T |
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| Q |
101 |
aaattttatcatcttgccaccaccagctattaattcttcatcgaccatattcaccaaagaagactttgcagcaattaagattcaagcttatttcaggggt |
200 |
Q |
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| T |
31594125 |
aaattttatcatcttgccaccaccagctattaattcttcattgaccatattcaccaaagaagactttgcagcaattaagattcaagcttatttcaggggt |
31594224 |
T |
|
| Q |
201 |
catctcgtatgtgattcataatttgtagcaactatatcaattttgctagcaagtgtatagttgcatatagtttttgactaacttttttgaattaaaagta |
300 |
Q |
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| T |
31594225 |
catctagtatgtgattcataatttgtagcaactatatcaatattgctagcaagt----------atatagtttttgactaacttttttgaataaaaagta |
31594314 |
T |
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| Q |
301 |
caaaatgtgtctcatgttaattgacttgattttgctactattgaattgaattgagcaggcaagaagagcacatagggcattgaaaagccttgtgaaattg |
400 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31594315 |
caaaa--tgtctcatgttaattgacttga-tttgctactattgaattgaattgagcaggcaagaagagcacatagggcattgaaaagccttgtgaaattg |
31594411 |
T |
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| Q |
401 |
caagcattggttcgcggggtgtgtgtgaggagacaatcgcgtatagcaatgcagtgtatgcacgcact |
468 |
Q |
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| T |
31594412 |
caagcattggttcgcggggtgtgtgtgaggagacaatcgcgtatagcaatgcagtgtatgcacgcact |
31594479 |
T |
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