View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_1 (Length: 724)
Name: NF6560_low_1
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Complemental strand, 25304106 - 25303651
Alignment:
| Q |
10 |
gcataggcaacccgatcgtttgaatacaaatcatttagaagaatatacggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaaga |
109 |
Q |
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| T |
25304106 |
gcataggcaacctaatcgtgtgaatacaaatcatttagaagaaaatatggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaaga |
25304007 |
T |
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| Q |
110 |
gctaagatgcactggttgaaacaaagggacgtgaatacaaggttcttttacatgtccactgtttcgagaggtaaagtcaagaaagttataaaactggtgt |
209 |
Q |
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| T |
25304006 |
gctaagatgcactggttgaaacaaagggacgtgaatagaaggttcttttacatgtccactgtttctagaggtaaagtcaagaaagttacaaaactggtgt |
25303907 |
T |
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| Q |
210 |
ctgataatggttatttggttatgagataggagcacctatgtgatgtagcaaagaattattttgatgtggtttttgcggccaacaatggtaaccatacgca |
309 |
Q |
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| T |
25303906 |
ttgataatggttatttggttatgagataggagcacctatgtgatgtagcaaataattattttgatgtggtttttgcagccaacaatggtaaccatacgca |
25303807 |
T |
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| Q |
310 |
tgttcttgattttctaaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagcgcaaacatgccctatttcaaat |
409 |
Q |
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| T |
25303806 |
tgttcttgattttctaaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagctcaaacatgccctatttcaaat |
25303707 |
T |
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| Q |
410 |
gcaacctgataagtccccaaggtctgatggatttaatcttgtgttctatcattatt |
465 |
Q |
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| T |
25303706 |
gcaacctgataagtcctcgaggtctgatggatttaatcctgcgttctatcattatt |
25303651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 464 - 586
Target Start/End: Complemental strand, 25302624 - 25302502
Alignment:
| Q |
464 |
ttcctatattattagtatatatgtcctccataattccatggttcatgatataaaacggatgattaatacatattggtcgggtggaggtggaaataattga |
563 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| | |||||||||||||| ||||||||| ||||| |||| |||||||||| ||||||||||| |
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| T |
25302624 |
ttcctatattatgagtatatatgacctccataattccattggtcatgatataaaacagatgattaacacatactggtggggtggaggttgaaataattga |
25302525 |
T |
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| Q |
564 |
gggattaaatggatgacgtggga |
586 |
Q |
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| T |
25302524 |
gggattaaatggatgacgtggga |
25302502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 7124477 - 7124523
Alignment:
| Q |
83 |
caggaggaggccttttggaaacaaagagctaagatgcactggttgaa |
129 |
Q |
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| T |
7124477 |
caggaggaggcgttttggaagcaaagagcaaaaatgcactggttgaa |
7124523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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