View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_10 (Length: 455)

Name: NF6560_low_10
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_10
NF6560_low_10
[»] chr4 (15 HSPs)
chr4 (15-455)||(52598719-52599160)
chr4 (28-247)||(37397355-37397578)
chr4 (47-213)||(16741242-16741406)
chr4 (158-217)||(27059415-27059474)
chr4 (47-133)||(30452927-30453013)
chr4 (165-207)||(56084281-56084323)
chr4 (69-140)||(40603000-40603071)
chr4 (53-137)||(9074224-9074307)
chr4 (47-126)||(52919083-52919160)
chr4 (47-126)||(55612015-55612092)
chr4 (47-102)||(6404604-6404659)
chr4 (206-247)||(27059359-27059400)
chr4 (268-317)||(47321485-47321534)
chr4 (47-126)||(47604196-47604273)
chr4 (174-222)||(54051289-54051337)
[»] chr1 (11 HSPs)
chr1 (63-247)||(28639355-28639537)
chr1 (47-201)||(35989471-35989631)
chr1 (50-190)||(15247748-15247888)
chr1 (132-220)||(48181822-48181910)
chr1 (47-134)||(41932990-41933076)
chr1 (47-113)||(21535350-21535416)
chr1 (171-247)||(7492656-7492731)
chr1 (47-126)||(12524539-12524616)
chr1 (198-247)||(15500169-15500218)
chr1 (47-126)||(4851764-4851841)
chr1 (51-126)||(21191348-21191421)
[»] chr5 (19 HSPs)
chr5 (50-247)||(27689827-27690027)
chr5 (47-247)||(25723861-25724060)
chr5 (47-219)||(10134297-10134474)
chr5 (47-151)||(22407006-22407110)
chr5 (47-133)||(23344331-23344417)
chr5 (60-228)||(36520128-36520296)
chr5 (47-145)||(22416850-22416948)
chr5 (60-177)||(27486260-27486377)
chr5 (47-151)||(8840969-8841073)
chr5 (47-146)||(8242513-8242612)
chr5 (47-133)||(28334865-28334951)
chr5 (47-126)||(5343371-5343448)
chr5 (197-246)||(13704618-13704667)
chr5 (63-187)||(13909439-13909563)
chr5 (47-126)||(32747270-32747347)
chr5 (170-228)||(17134417-17134475)
chr5 (161-222)||(31573898-31573959)
chr5 (47-126)||(6432042-6432119)
chr5 (161-233)||(26204131-26204203)
[»] chr3 (13 HSPs)
chr3 (50-231)||(29582767-29582947)
chr3 (47-133)||(27024828-27024913)
chr3 (47-128)||(26799504-26799585)
chr3 (47-133)||(10494231-10494318)
chr3 (47-133)||(27036085-27036170)
chr3 (47-113)||(51328496-51328562)
chr3 (47-126)||(16483284-16483361)
chr3 (47-126)||(41974199-41974276)
chr3 (177-219)||(30603466-30603508)
chr3 (178-247)||(51135138-51135207)
chr3 (65-133)||(12718143-12718211)
chr3 (47-83)||(47374438-47374474)
chr3 (47-126)||(49326946-49327023)
[»] chr7 (15 HSPs)
chr7 (84-247)||(6056045-6056209)
chr7 (47-235)||(18500866-18501052)
chr7 (70-247)||(48374921-48375098)
chr7 (62-113)||(18043514-18043565)
chr7 (47-133)||(26187749-26187836)
chr7 (161-211)||(5747895-5747945)
chr7 (47-125)||(38264676-38264752)
chr7 (147-247)||(2669770-2669872)
chr7 (53-128)||(25879877-25879951)
chr7 (47-125)||(38257101-38257177)
chr7 (198-236)||(139033-139071)
chr7 (47-133)||(1377882-1377968)
chr7 (47-126)||(15032203-15032280)
chr7 (47-126)||(24687149-24687226)
chr7 (47-83)||(43748863-43748899)
[»] chr2 (12 HSPs)
chr2 (50-247)||(34415454-34415651)
chr2 (47-128)||(37127451-37127532)
chr2 (161-243)||(34341209-34341291)
chr2 (47-119)||(21484799-21484871)
chr2 (47-125)||(5464014-5464090)
chr2 (63-128)||(26414980-26415045)
chr2 (180-247)||(40186090-40186157)
chr2 (161-247)||(41755200-41755286)
chr2 (162-222)||(12367577-12367637)
chr2 (47-126)||(15112975-15113052)
chr2 (47-126)||(24168876-24168952)
chr2 (180-236)||(32122591-32122647)
[»] chr8 (4 HSPs)
chr8 (47-146)||(32123950-32124049)
chr8 (161-233)||(27842631-27842701)
chr8 (47-113)||(21268559-21268625)
chr8 (47-126)||(24831182-24831259)
[»] chr6 (8 HSPs)
chr6 (47-185)||(33554619-33554757)
chr6 (143-234)||(11642903-11642995)
chr6 (47-127)||(20819061-20819141)
chr6 (50-124)||(28547364-28547438)
chr6 (47-138)||(12304736-12304825)
chr6 (72-127)||(19624466-19624521)
chr6 (192-247)||(33553971-33554026)
chr6 (47-126)||(13037315-13037392)
[»] scaffold0001 (1 HSPs)
scaffold0001 (47-128)||(426780-426861)
[»] scaffold0160 (1 HSPs)
scaffold0160 (47-125)||(16826-16904)
[»] scaffold0039 (1 HSPs)
scaffold0039 (96-246)||(112893-113042)
[»] scaffold0054 (1 HSPs)
scaffold0054 (47-113)||(18573-18639)
[»] scaffold0050 (1 HSPs)
scaffold0050 (63-133)||(77788-77858)
[»] scaffold0016 (1 HSPs)
scaffold0016 (163-216)||(109779-109832)
[»] scaffold0064 (1 HSPs)
scaffold0064 (191-247)||(61437-61493)
[»] scaffold0210 (1 HSPs)
scaffold0210 (47-133)||(7687-7773)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 52598719 - 52599160
Alignment:
Q  15 aaaatgatgaaatgcaaggtgttttaaaagaattgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52598719 aaaatgatgaaatgcaaggtgttttaaaagaattgagttagatcgcgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcag 52598818  T
Q  115 agcaacctcttggtgttcatatctttcggaagatttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatg 214  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  52598819 agcaacctcttggtgttcatatctttcggaagattttttagagttttttgttgtgtttcacaacaaatgaaccgaagacacctatttatagaagtttatg 52598918  T
Q  215 tgcgtcgtagaccacataaactttcggtgcaatagctcaccaaaactttatatagactagctcaccaaaattgacaacaaagataatcgaacctaagatt 314  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52598919 tgcgttgtagaccacataaactttcggtgcaatagctcaccaaaactttatatagactagctcaccaaaattgacaacaaagataatcgaatctaagatt 52599018  T
Q  315 ttgnnnnnnntatagtaatttgaactatgtaatcactctaagtacgtgtacatataacttaattgagtaagacttaaacggtcacacggccaaatatata 414  Q
    |||        | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52599019 ttgaaaaaaaaaaattaatttgaactatgtaatcactctaagtacgtgtacatataacttaattgagtaagacttaaacggtcacacggccaaatatata 52599118  T
Q  415 gtga-ttatgtacggacacaaagttgcacatatcctcaaaat 455  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  52599119 gtgatttatgtacggacgcaaagttgcacatatcctcaaaat 52599160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 37397578 - 37397355
Alignment:
Q  28 gcaaggtgttttaaaagaa-----ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacct 122  Q
    |||||||||||||| ||||     |||||||||||| ||  | ||||||||||||||||||| |||| |||||||| |||||||| ||||| | |||| |    
T  37397578 gcaaggtgttttaagagaattgttttgagttagatcatgacgtcttgccaactgacatatttctatttccaaggcaacaagatctggctcataacaacat 37397479  T
Q  123 cttggtgttcatatctttcggaagatttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgt 222  Q
    ||||||||||||| ||||| | | |||||||| | ||||||||||| ||||||| |||| |||||||  |  || |||||||||||||| |||| ||| |    
T  37397478 cttggtgttcatacctttcagta-atttttcatagttttttgttgtattttacatcaaaagaaccaagcatgctaatttatagaagtttttgtgtgtcat 37397380  T
Q  223 agaccacataaactttcggtgcaat 247  Q
      ||||||||||||||| |||||||    
T  37397379 gtaccacataaactttcagtgcaat 37397355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 16741406 - 16741242
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcgga-a 145  Q
    |||||||||||| || |||||||| ||||||||||||| || |||||||||| ||| |||||||||| | |||||||||| ||||||||||||||||| |    
T  16741406 ttgagttagatcatgctgccttgcaaactgacatatttctaatgccaaggcaacaaaatctagctcataacaacctcttgatgttcatatctttcggata 16741307  T
Q  146 gatttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttat 213  Q
    |||||||   | ||||| ||| |||||| |||||||| ||   |  ||||| ||||||||||||||||    
T  16741306 gattttt---agtttttagttttgttttgcaacaaattaatagagcacactaatttatagaagtttat 16741242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 27059474 - 27059415
Alignment:
Q  158 ttttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgc 217  Q
    ||||||||||||||||||| ||||||||||||| ||||  |||||||||||||| |||||    
T  27059474 ttttttgttgtgttttacagcaaatgaaccaaacacaccaatttatagaagtttttgtgc 27059415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 30452927 - 30453013
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    ||||||||||||  |||| ||||||||||||||||||| || |||| | |||||| ||||||||||| |  ||| ||||||||||||    
T  30452927 ttgagttagatcacgttgtcttgccaactgacatatttctactgccgaagcagcaggatctagctcataataacatcttggtgttca 30453013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 56084281 - 56084323
Alignment:
Q  165 ttgtgttttacaacaaatgaaccaaagacacttatttatagaa 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  56084281 ttgtgttttacaacaaatgaaccaaacacacttatttatagaa 56084323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 40603000 - 40603071
Alignment:
Q  69 gccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatcttt 140  Q
    ||||| |||| |||| |||||||||||||||||||||  |||||| || ||||||||| | |||||||||||    
T  40603000 gccaaatgacttattcatattgccaaggcagcaagattgagctcatagaaacctcttgattttcatatcttt 40603071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 9074224 - 9074307
Alignment:
Q  53 tagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatc 137  Q
    |||||| ||||| ||| ||||| ||||||||| ||||| || | || |||||||||| ||| | |||||||||||||||||||||    
T  9074224 tagatcatgttgtctttccaac-gacatatttctattggcatgacaacaagatctagttcataacaacctcttggtgttcatatc 9074307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 52919160 - 52919083
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  |||||||| |||||| |||| ||||||||||||    
T  52919160 ttgagttagatcctgctgccttgccaaatgacatattcatctggc--aggcagcacgatctaactcatagcaacctcttg 52919083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 55612092 - 55612015
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||| ||||||| || ||||||| ||| ||||||||| || ||||  ||||||||||||||| |||| ||||||||||||    
T  55612092 ttgacttagatcctgctgccttgtcaaatgacatattcatcttgc--aggcagcaagatctaactcatagcaacctcttg 55612015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 6404659 - 6404604
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaa 102  Q
    |||||||||||| || ||| ||||||||||||||||||   |||||||||||||||    
T  6404659 ttgagttagatcatgctgctttgccaactgacatatttcctttgccaaggcagcaa 6404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 27059400 - 27059359
Alignment:
Q  206 aagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    |||||| |||||||||| ||||||||||||| ||||||||||    
T  27059400 aagtttttgtgcgtcgtggaccacataaactgtcggtgcaat 27059359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 47321485 - 47321534
Alignment:
Q  268 agactagctcaccaaaattgacaacaaagataatcgaacctaagattttg 317  Q
    ||||||||||||||||||||||| ||| |||||| ||| |||| ||||||    
T  47321485 agactagctcaccaaaattgacaccaatgataattgaatctaatattttg 47321534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 47604196 - 47604273
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  || |||||||||||| |||| | ||||||||||    
T  47604196 ttgagttagatcctgctgccttgccaaatgacatattcatctggc--agacagcaagatctaactcatatcaacctcttg 47604273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 54051289 - 54051337
Alignment:
Q  174 acaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgt 222  Q
    ||||||||||||||||| |||  |||||||| ||||||||||| |||||    
T  54051289 acaacaaatgaaccaaacacatctatttatacaagtttatgtgtgtcgt 54051337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 63 - 247
Target Start/End: Complemental strand, 28639537 - 28639355
Alignment:
Q  63 tgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcagaattttt 162  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||  ||||||||||||  |||||    
T  28639537 tgccatgccaactgacatatttatattgtcaagacagcaagatctagctcatagcaacctcttggtgttcatatcgttcaaaagatttttcag--ttttt 28639440  T
Q  163 tgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    ||||||||||||||||||||||||| |  ||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||||||    
T  28639439 tgttgtgttttacaacaaatgaaccgagcacacttatttataaaggtttatgtgcgtcgtggaccaaataaactgtcggtgcaat 28639355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 35989631 - 35989471
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaa- 145  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| ||| |||||||| || | |||||||||||| |||||||||| ||| |||     
T  35989631 ttgagttagatcatgatgccttgccaactgacatatttatattgccaagacagtaagatctaacttaaagcaacctcttgatgttcatatcattcagaag 35989532  T
Q  146 gatttttcaga-----attttttgttgtgttttacaacaaatgaaccaaagacacttattt 201  Q
    | |||||||||      ||||||||||||||||||| ||||||||||||  ||||||||||    
T  35989531 gttttttcagagtttttttttttgttgtgttttacagcaaatgaaccaagcacacttattt 35989471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 15247748 - 15247888
Alignment:
Q  50 agttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatt 149  Q
    ||||||||  ||||| ||||||||||||||||||| ||||| |||| || ||||||||| |||| | ||| |||||||||||||||| |||||||  |||    
T  15247748 agttagataatgttgtcttgccaactgacatatttctattgtcaagacaacaagatctaactcataacaatctcttggtgttcatatttttcggataatt 15247847  T
Q  150 tttcagaattttttgttgtgttttacaacaaatgaaccaaa 190  Q
    ||||| | ||||||| ||| ||||||| |||||||||||||    
T  15247848 tttcatagttttttgctgtattttacagcaaatgaaccaaa 15247888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 48181910 - 48181822
Alignment:
Q  132 catatctttcggaagatttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtc 220  Q
    |||||||| |||||||||||||| | ||||||||||||||||| | || ||||||| |  ||||| |||||||||||||||||||||||    
T  48181910 catatcttgcggaagatttttcaaagttttttgttgtgttttaaagcagatgaaccgagcacactaatttatagaagtttatgtgcgtc 48181822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 41933076 - 41932990
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcat 134  Q
    |||||||||||| |||||||||||||||| |||||  | ||||||||||||| || |||||||| || | ||| ||||||||||||||    
T  41933076 ttgagttagatcatgttgccttgccaact-acataggtttattgccaaggcatcacgatctagcccataacaatctcttggtgttcat 41932990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 21535416 - 21535350
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctca 113  Q
    |||||||||||| || ||||||||||| ||| |||||| ||||||||| ||| ||||||||||||||    
T  21535416 ttgagttagatcctgctgccttgccaagtgagatatttttattgccaatgcaccaagatctagctca 21535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 7492731 - 7492656
Alignment:
Q  171 tttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    |||||||||||||||| ||  ||||  |||||||||||||| |||||||||||||||| ||||| |  |||||||||    
T  7492731 tttacaacaaatgaac-aagcacaccaatttatagaagtttttgtgcgtcgtagaccatataaattgccggtgcaat 7492656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 12524616 - 12524539
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || || |||||||| ||||||||| || | ||  ||||||||||||||| |||| ||||||||||||    
T  12524616 ttgagttagatcctgctgtcttgccaaatgacatattcatctggc--aggcagcaagatctaactcatagcaacctcttg 12524539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 15500169 - 15500218
Alignment:
Q  198 atttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    |||||||||||||| |||| |||||||||||| |||||| ||||| ||||    
T  15500169 atttatagaagtttttgtgtgtcgtagaccacctaaactgtcggtacaat 15500218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 4851764 - 4851841
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  ||||| ||||||||| |||| | ||||||||||    
T  4851764 ttgagttagatcatgctgccttgccaaatgacatattcatctggc--aggcaacaagatctaactcataacaacctcttg 4851841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 21191348 - 21191421
Alignment:
Q  51 gttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||| || ||||||||||| ||||||||| || | ||  ||| ||||||||||| |||| ||||||||||||    
T  21191348 gttagatcatgctgccttgccaaatgacatattcatctggc--aggtagcaagatctaactcatagcaacctcttg 21191421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 247
Target Start/End: Complemental strand, 27690027 - 27689827
Alignment:
Q  50 agttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttc----ggaa 145  Q
    ||||||||| || ||||||||| ||||| |||||||| | ||||||||||||||||||| |||| |||||||||||| ||||||||||||||    ||||    
T  27690027 agttagatcatgatgccttgcctactgagatatttatgtcgccaaggcagcaagatctaactcatagcaacctcttgatgttcatatctttcagaaggaa 27689928  T
Q  146 gatttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgca 245  Q
    ||||||  || | |||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| ||||||| ||||| || |||||    
T  27689927 gattttaaag-agtttttgttgtgttttacagcaaatgaatcaaacacacttatttatagaagtttttgtgcgtcgtggaccacaaaaactgtcagtgca 27689829  T
Q  246 at 247  Q
    ||    
T  27689828 at 27689827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 47 - 247
Target Start/End: Complemental strand, 25724060 - 25723861
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||| | |    
T  25724060 ttgagttagatcttgctgccttgccaactgacatatttatattgccaaagcaacaagatctagctcatagcaacctcttggtgttcatatcgttcgaagg 25723961  T
Q  147 atttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaa 246  Q
    ||||| || | ||||||||||   |||| |||||||||||| |  |||||||||||| || |||||||| |||||| ||||||| ||| | | |||||||    
T  25723960 attttacaaagttttttgttg-catttataacaaatgaaccgagcacacttatttatggaggtttatgtccgtcgtggaccacaaaaattgttggtgcaa 25723862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 10134474 - 10134297
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagc-aagatctagctcagagcaacctcttggtgttcatatcttt----c 141  Q
    |||||||||||| || ||||||||||||||| ||| ||||||  |||||| ||| |||||| |||||| | |||||||||| |||||||||||||         
T  10134474 ttgagttagatcatgctgccttgccaactgagatacttatatcaccaaggtagcaaagatcgagctcataacaacctcttgatgttcatatcttttggaa 10134375  T
Q  142 ggaagatttttcagaattttttgttgtgtt-ttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgt 219  Q
    ||||||||||||| |  ||||| ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10134374 ggaagatttttca-atgtttttattgtgttcttacaacaaatgaaccaagcacacttatttatagaagtttatgtgcgt 10134297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 22407110 - 22407006
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||| ||||||| || |||||||||||||||||||||||  ||||    
T  22407110 ttgagttagatcattttgccttgccaactgacatatttatattgtcaaggcaacaagatatagctcatagaaacctcttggtgttcatatctttgagaag 22407011  T
Q  147 atttt 151  Q
    |||||    
T  22407010 atttt 22407006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 23344417 - 23344331
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    |||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  23344417 ttgagttagatcatgttgccttgccaactgagatatttatatcgccaaggcagcaagatctagctcatagcaacctcttggtattca 23344331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 36520296 - 36520128
Alignment:
Q  60 tgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcaga-at 158  Q
    ||||||||| |||||| ||| ||||||||||| |||||| ||| |||||||||| |||||| |||||||||||||||  || | |||||||||||||  |    
T  36520296 tgttgccttaccaacttacaaatttatattgc-aaggcaacaatatctagctcatagcaacatcttggtgttcatattgtttgaaagatttttcagagtt 36520198  T
Q  159 tttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagacca 228  Q
    |||||  ||||||||||| |||||||| | |  ||| ||||||||||| |||||||||||| || |||||    
T  36520197 tttttaatgtgttttacagcaaatgaagcgagcacaattatttatagaggtttatgtgcgttgtggacca 36520128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 22416948 - 22416850
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaa 145  Q
    ||||||||||||  ||||||||| |||||||||||||| ||||| ||||||| |||||| || |||| || ||||||||||||||||||||||| ||||    
T  22416948 ttgagttagatcacgttgccttgtcaactgacatatttctattgtcaaggcaacaagatataactcatagaaacctcttggtgttcatatcttttggaa 22416850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 27486260 - 27486377
Alignment:
Q  60 tgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcagaatt 159  Q
    ||||| ||| |||||||| |||||| ||||||||| ||||||  ||||| |||| | |||||||||| |||||||||||||| ||  |||||||||| ||    
T  27486260 tgttgtcttaccaactgatatatttctattgccaaagcagcacaatctaactcatatcaacctcttgatgttcatatctttcagataatttttcagagtt 27486359  T
Q  160 ttttgttgtgttttacaa 177  Q
    ||||||| || |||||||    
T  27486360 ttttgttatgctttacaa 27486377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 8840969 - 8841073
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||||||||||  ||||||||| ||||||||||||  ||||||||||||| | || ||||||||| | || |||||||| || ||||||||||||| |||    
T  8840969 ttgagttagattatgttgcctttccaactgacataggtatattgccaaggaaacacgatctagcttatagaaacctcttagtattcatatctttcgaaag 8841068  T
Q  147 atttt 151  Q
    |||||    
T  8841069 atttt 8841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 8242612 - 8242513
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||||||||||  || ||| |||||||||||||||  |||| |||||||||| || ||||||||||| |||||| |||| |||||||||||||| |||||    
T  8242612 ttgagttagatattgctgcattgccaactgacataggtataatgccaaggcaacaggatctagctcatagcaacttcttcgtgttcatatcttttggaag 8242513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 28334865 - 28334951
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    |||||||||||| || || |||||||||| | ||||| |||| | ||||| ||||||||||| |||| |||||||||||||| ||||    
T  28334865 ttgagttagatcttgctgtcttgccaactaagatattaatatcgtcaaggtagcaagatctaactcatagcaacctcttggtattca 28334951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 5343448 - 5343371
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  ||||||||||||||| |||| ||||||||||||    
T  5343448 ttgagttagatcttgctgccttgccaaatgacatattcatctggc--aggcagcaagatctaactcatagcaacctcttg 5343371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 13704618 - 13704667
Alignment:
Q  197 tatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaa 246  Q
    ||||||||||||||  |||||||||||||||||||||| | |||||||||    
T  13704618 tatttatagaagttactgtgcgtcgtagaccacataaattgtcggtgcaa 13704667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 13909563 - 13909439
Alignment:
Q  63 tgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcagaattttt 162  Q
    ||||||||||||||| |||| | ||||| ||||||| ||||||||  | || | | |||  |||||| ||||||| | |  |  |||||||| | || ||    
T  13909563 tgccttgccaactgagatatatctattgacaaggcaacaagatcttacccataactaccgtttggtgctcatatcctccaaacaatttttcatagttctt 13909464  T
Q  163 tgttgtgttttacaacaaatgaacc 187  Q
    |||||||||||||||||||||||||    
T  13909463 tgttgtgttttacaacaaatgaacc 13909439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 32747270 - 32747347
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  ||||| ||||||||| |||| ||||||||||||    
T  32747270 ttgagttagatcatgctgccttgccaaatgacatattcatctggc--aggcaacaagatctaactcatagcaacctcttg 32747347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 17134417 - 17134475
Alignment:
Q  170 ttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagacca 228  Q
    ||||||||||||||||| ||| ||| ||||||||| || |||||||| || ||||||||    
T  17134417 ttttacaacaaatgaacaaaacacatttatttatacaaatttatgtgtgttgtagacca 17134475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 31573959 - 31573898
Alignment:
Q  161 tttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgt 222  Q
    |||||| ||||||||| ||||||||||||| ||||  |||||||||| | ||||||| ||||    
T  31573959 tttgttttgttttacatcaaatgaaccaaacacaccaatttatagaattctatgtgcatcgt 31573898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 6432119 - 6432042
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  ||||||||  ||||| |||| ||||||||||||    
T  6432119 ttgagttagatcctgctgccttgccaaatgacatattcatctggc--aggcagcacaatctaactcatagcaacctcttg 6432042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 26204203 - 26204131
Alignment:
Q  161 tttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataa 233  Q
    |||| |||| |||||||||||||||||||| ||  |||||| || |||| |||| || | |||||||||||||    
T  26204203 tttggtgtggtttacaacaaatgaaccaaacacgtttatttttacaagtatatgagcattgtagaccacataa 26204131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 29582767 - 29582947
Alignment:
Q  50 agttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatt 149  Q
    ||||||||  ||||| ||||||||||||||||||||||||| || ||||||||||||| | ||  |||||| ||||||||||||||||||||||||||||    
T  29582767 agttagattatgttgtcttgccaactgacatatttatattgtcagggcagcaagatctggttcgtagcaacatcttggtgttcatatctttcggaagatt 29582866  T
Q  150 tttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacat 231  Q
    ||||||  |||||||||||| ||||   |||||||||| |  ||| | ||||||||||||||||||||||||||||||||||    
T  29582867 tttcag-tttttttgttgtgctttatggcaaatgaaccgagcacagtaatttatagaagtttatgtgcgtcgtagaccacat 29582947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 27024828 - 27024913
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    |||||||||||| || ||||||||||||||| ||||||||| |||||||| ||||||||||||||||  ||||||||||||| ||||    
T  27024828 ttgagttagatcctgctgccttgccaactgagatatttata-tgccaaggaagcaagatctagctcatggcaacctcttggtattca 27024913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 26799504 - 26799585
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggt 128  Q
    |||||||||||| || ||||||||||||||| |||||||||| | ||||||| |||||||||||| | ||||||||||||||    
T  26799504 ttgagttagatcatgctgccttgccaactgatatatttatatcgtcaaggcaccaagatctagctaatagcaacctcttggt 26799585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 10494318 - 10494231
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagc-aacctcttggtgttca 133  Q
    |||||||||||| || ||||||||||||||| |||||| ||| |||| ||||||| |||||| |||| ||| ||||||||||| ||||    
T  10494318 ttgagttagatcttgctgccttgccaactgagatatttctatcgccacggcagcatgatctaactcatagcaaacctcttggtattca 10494231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 27036085 - 27036170
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    |||||||||||| || | ||||||||||||  |||||||||| ||||||| ||||||||||||||||  |||||||| |||| ||||    
T  27036085 ttgagttagatcctgctcccttgccaactgg-atatttatatcgccaaggaagcaagatctagctcatggcaacctcctggtattca 27036170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 51328562 - 51328496
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctca 113  Q
    ||||||||||||||| ||| ||||||||| | |||||| ||| ||||||||| ||||||||||||||    
T  51328562 ttgagttagatcgtgctgcattgccaacttagatatttctatcgccaaggcaccaagatctagctca 51328496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 16483284 - 16483361
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||| ||||||| || ||||||| ||| ||||||||| || ||||  ||||||||||||||| |||| ||||||||||||    
T  16483284 ttgacttagatcctgctgccttgtcaaatgacatattcatcttgc--aggcagcaagatctaactcatagcaacctcttg 16483361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 41974276 - 41974199
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  || |||||||||||| |||| ||||||||||||    
T  41974276 ttgagttagatcttgctgccttgccaaatgacatattcatctggc--agacagcaagatctaactcatagcaacctcttg 41974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 30603508 - 30603466
Alignment:
Q  177 acaaatgaaccaaagacacttatttatagaagtttatgtgcgt 219  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||    
T  30603508 acaaatgaacaaaacacactaatttatagaagtttatgtgcgt 30603466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 51135207 - 51135138
Alignment:
Q  178 caaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    ||||||||||||| |  | |||||||||||||||||||||||| | ||||||| ||| |||  |||||||    
T  51135207 caaatgaaccaaacatgcctatttatagaagtttatgtgcgtcatggaccacaaaaaatttatgtgcaat 51135138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 12718143 - 12718211
Alignment:
Q  65 ccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    ||||||||||| | |||||||||||||  ||||| ||  |||||||||| |||||||| ||||| ||||    
T  12718143 ccttgccaacttagatatttatattgctgaggcaccattatctagctcatagcaacctattggtattca 12718211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 47374474 - 47374438
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatt 83  Q
    |||||||||||| |||||||||||||| |||||||||    
T  47374474 ttgagttagatcatgttgccttgccaaatgacatatt 47374438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 49327023 - 49326946
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||  || ||||||||||| ||||||||| || | ||  || |||||||||||| |||| ||||||||||||    
T  49327023 ttgagttagatgttgctgccttgccaaatgacatattcatctggc--agacagcaagatctaactcatagcaacctcttg 49326946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 6056209 - 6056045
Alignment:
Q  84 tatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcagaatttttt-gttgtgttttacaacaaat 182  Q
    ||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||    
T  6056209 tatattgtcaaagcaacaagatctagctcatagcaacctcttggtgttcatatctttcagaagattttttagagtttttttgttgtgttttacaacaaat 6056110  T
Q  183 gaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    | ||||||   |||||||||||||||||| ||||  |||| ||||||||||||| ||||||||||    
T  6056109 gtaccaaacctacttatttatagaagtttttgtgaatcgtggaccacataaactgtcggtgcaat 6056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 18500866 - 18501052
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||||||||||| ||||| ||||||||||||||||  ||||||||||||||| |||||||||||||| || ||| ||||||||||||||| |||| |||     
T  18500866 ttgagttagatcatgttgtcttgccaactgacataggtatattgccaaggcatcaagatctagctcatagaaacatcttggtgttcatatatttcagaa- 18500964  T
Q  147 atttttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaac 235  Q
    |  |||| || |||||||||||||||||||  ||||||| |||  |||||||||||||||| ||| |||||||||| ||||||||||||    
T  18500965 aaatttcggagttttttgttgtgttttacagaaaatgaatcaagcacacttatttatagaa-tttttgtgcgtcgtggaccacataaac 18501052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 247
Target Start/End: Original strand, 48374921 - 48375098
Alignment:
Q  70 ccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcagaattttttgttgtg 169  Q
    ||||||||||||||| ||||| || |||| |||||||||||||| |  | |||| ||||||||||||| |||  | ||||||||| | |||||| || ||    
T  48374921 ccaactgacatatttctattgtcatggcaacaagatctagctcataatagcctcatggtgttcatatccttcaaatgatttttcaaagttttttattatg 48375020  T
Q  170 ttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    ||||||||||||| ||   |  | ||| |||||||||| ||| ||||||||||| | |||||||| | ||| ||||||    
T  48375021 ttttacaacaaataaattgagcagactaatttatagaaatttttgtgcgtcgtaaaacacataaattatcgatgcaat 48375098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 18043514 - 18043565
Alignment:
Q  62 ttgccttgccaactgacatatttatattgccaaggcagcaagatctagctca 113  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  18043514 ttgccttgccaactgacatatttatattgtcaaggcaacaagatctagctca 18043565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 26187836 - 26187749
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagc-aacctcttggtgttca 133  Q
    |||||||||||| || ||||||||||||||| |||||| ||| |||||||||  |||||||| |||| ||| ||||||||||| ||||    
T  26187836 ttgagttagatcctgctgccttgccaactgagatatttctatcgccaaggcaataagatctaactcatagcaaacctcttggtattca 26187749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 5747945 - 5747895
Alignment:
Q  161 tttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagttt 211  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  5747945 tttgttgtgttttacaacaaatgaaccaaacacaccaatttatagaagttt 5747895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 38264752 - 38264676
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctctt 125  Q
    |||||||||||| || ||||||||||| ||||||||| || | |  |||||||||||||||| |||| |||||||||||    
T  38264752 ttgagttagatcatgctgccttgccaaatgacatattcatctgg--aaggcagcaagatctaactcatagcaacctctt 38264676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 2669770 - 2669872
Alignment:
Q  147 atttttcagaattttttgttgtgttttacaacaaatgaaccaaagacac--ttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgc 244  Q
    |||||||| | || |||| ||||||||||||||||||||| ||| | ||   |||||||| || ||| | ||| |||| ||||||||||||| |||||||    
T  2669770 atttttcatagttctttgatgtgttttacaacaaatgaacaaaaaaaacgtctatttataaaattttctatgcatcgtggaccacataaactgtcggtgc 2669869  T
Q  245 aat 247  Q
    |||    
T  2669870 aat 2669872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 25879877 - 25879951
Alignment:
Q  53 tagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggt 128  Q
    |||||| |||||||| |||||||||||||||| |||||  ||| |||||||||||| ||||   ||||||||||||    
T  25879877 tagatcatgttgcct-gccaactgacatatttctattgataagacagcaagatctaactcatcacaacctcttggt 25879951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 38257177 - 38257101
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctctt 125  Q
    |||||||||||| || ||||||||||| ||||||||| || | |  |||||| ||||||||| |||| |||||||||||    
T  38257177 ttgagttagatcatgctgccttgccaaatgacatattcatctgg--aaggcaacaagatctaactcatagcaacctctt 38257101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 139033 - 139071
Alignment:
Q  198 atttatagaagtttatgtgcgtcgtagaccacataaact 236  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  139033 atttatagaagtttatgtgcgttgtagaccacaaaaact 139071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 1377882 - 1377968
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    ||||||||||||  | |||||| |||| ||| |||||||||| ||  |||||| |  |||||||||| |||||||||||||| ||||    
T  1377882 ttgagttagatccggctgcctttccaattgagatatttatatcgcataggcagaacaatctagctcatagcaacctcttggtattca 1377968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 15032280 - 15032203
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    ||||| |||||| || ||||||||||| ||||||||| || | ||  || |||||||||||| |||| ||||||||||||    
T  15032280 ttgagctagatcttgctgccttgccaaatgacatattcatctggc--agacagcaagatctaactcatagcaacctcttg 15032203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 24687226 - 24687149
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || || |||||||  ||||||||| || | ||  ||||||||||||||| |||| ||||||||||||    
T  24687226 ttgagttagatcttgctggcttgccacatgacatattcatctggc--aggcagcaagatctaactcatagcaacctcttg 24687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 43748899 - 43748863
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatt 83  Q
    |||||||||||| |||||||||||||| |||||||||    
T  43748899 ttgagttagatcatgttgccttgccaaatgacatatt 43748863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 247
Target Start/End: Complemental strand, 34415651 - 34415454
Alignment:
Q  50 agttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatt 149  Q
    ||||||||  ||||| ||||| ||||||||||||| |||||| |||||| || |||||| |||| | ||| ||||   |||||||||||  ||||  |      
T  34415651 agttagataatgttgtcttgctaactgacatatttctattgctaaggcatcacgatctatctcataacaatctctacatgttcatatctaccggataacg 34415552  T
Q  150 tttcagaattttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    ||||| | || |||| |||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||| ||||||| ||| | | ||||||||    
T  34415551 tttcatagttctttggtgtgttttacaaaaaatgaaccaaacacactaatttatagaagtttttgtgcgtcgtggaccacagaaattgttggtgcaat 34415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 37127532 - 37127451
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggt 128  Q
    |||||||||||  ||||| |||||||||| | |||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  37127532 ttgagttagatattgttgtcttgccaactaagatatttatatcgccaaggcaccaagatctagctcatagcaacctcttggt 37127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 34341209 - 34341291
Alignment:
Q  161 tttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtg 243  Q
    |||||||| ||||||||||||||||||||| ||||  ||||||| |||||| |||||||||| ||||||| ||| | ||||||    
T  34341209 tttgttgtcttttacaacaaatgaaccaaacacaccaatttatacaagtttttgtgcgtcgtggaccacaaaaattgtcggtg 34341291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 21484871 - 21484799
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaa 119  Q
    |||||||||||| || ||||||| ||||||| |||||| |||||| |||||| |||||||||||||| |||||    
T  21484871 ttgagttagatcctgctgccttgtcaactgagatatttctattgctaaggcaccaagatctagctcatagcaa 21484799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 5464090 - 5464014
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctctt 125  Q
    |||||||||||| || ||||||||||| ||||||||| || | ||  ||||||||||||||| |||| |||||||||||    
T  5464090 ttgagttagatcctgctgccttgccaaatgacatattcatctggc--aggcagcaagatctaactcatagcaacctctt 5464014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 26415045 - 26414980
Alignment:
Q  63 tgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggt 128  Q
    ||||||||||| | | |||||||||| |||||||||  |||||||| |||| ||||||||||||||    
T  26415045 tgccttgccaattaagatatttatatcgccaaggcaataagatctaactcatagcaacctcttggt 26414980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 40186090 - 40186157
Alignment:
Q  180 aatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    ||||||||||| ||||| |||| ||||||   ||||||||||| ||||||||||| | ||||||||||    
T  40186090 aatgaaccaaacacactaatttttagaaggcaatgtgcgtcgtggaccacataaattgtcggtgcaat 40186157  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 41755286 - 41755200
Alignment:
Q  161 tttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    |||||||| ||||| |||||||||| |||| ||    ||||||||||||||||||||||||| ||  ||||||| | || |||||||    
T  41755286 tttgttgtcttttataacaaatgaaacaaacacgtcaatttatagaagtttatgtgcgtcgtggattacataaagtgtcagtgcaat 41755200  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 12367637 - 12367577
Alignment:
Q  162 ttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgt 222  Q
    |||||| ||||||||||||||||| |||| ||  ||||||||| |||||| ||||| ||||    
T  12367637 ttgttgcgttttacaacaaatgaatcaaacacgtttatttatacaagtttttgtgcatcgt 12367577  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 15113052 - 15112975
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| || |||||| |||| ||||||||| || | ||  ||||||||||||||| |||| | ||||||||||    
T  15113052 ttgagttagatcctgctgccttaccaaatgacatattcatctggc--aggcagcaagatctaactcataacaacctcttg 15112975  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 24168876 - 24168952
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| |  ||||||||||| |||||||||||| | ||  ||||||||||||||| |||| | ||||||||||    
T  24168876 ttgagttagatcctactgccttgccaa-tgacatatttatctggc--aggcagcaagatctaactcataacaacctcttg 24168952  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 32122647 - 32122591
Alignment:
Q  180 aatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaact 236  Q
    |||||||| || |||||  |||||||||||||||||||||| | || ||||||||||    
T  32122647 aatgaaccgaacacactagtttatagaagtttatgtgcgtcatggatcacataaact 32122591  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 32124049 - 32123950
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||||||||||| || ||||||||||||||| || |||||||  ||||||||| ||||||||||||  |||||||||||||||||||||||||| |||||    
T  32124049 ttgagttagatcttgctgccttgccaactgagatttttatatctccaaggcagtaagatctagctcttagcaacctcttggtgttcatatcttttggaag 32123950  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 27842701 - 27842631
Alignment:
Q  161 tttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataa 233  Q
    ||||||||||||||||||||||||| ||||  ||   ||||||| ||||||||||||||||| ||||||||||    
T  27842701 tttgttgtgttttacaacaaatgaatcaaa--catcaatttatacaagtttatgtgcgtcgtggaccacataa 27842631  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 21268625 - 21268559
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctca 113  Q
    |||||||||||| || || ||| |||||||| |||||| ||||| |||||||||| |||||||||||    
T  21268625 ttgagttagatcctgctgtcttaccaactgagatatttctattgtcaaggcagcacgatctagctca 21268559  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 24831182 - 24831259
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    |||||||||||| |  ||||||||||| ||||||||| || | ||  ||||||||||||||| |||| ||||||||||||    
T  24831182 ttgagttagatcttactgccttgccaaatgacatattcatctggc--aggcagcaagatctaactcatagcaacctcttg 24831259  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 33554757 - 33554619
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaag 146  Q
    |||| ||| ||| |||||||||| ||||||||| |||| ||||| | | | | |||||||||||||| ||||||| |||||||||||||||||| ||| |    
T  33554757 ttgatttatatcttgttgccttgtcaactgacaaatttctattgtcgaagtaacaagatctagctcacagcaaccacttggtgttcatatcttttggatg 33554658  T
Q  147 atttttcagaattttttgttgtgttttacaacaaatgaa 185  Q
    |||||||| | | ||| |||||||||| |||||||||||    
T  33554657 atttttcatagtctttggttgtgttttgcaacaaatgaa 33554619  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 11642903 - 11642995
Alignment:
Q  143 gaagatttttcaga-attttttgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtgcgtcgtagaccacataaa 234  Q
    |||||||||||||| |||||||||||||||||| |  ||||||||| |  ||||| |||||||||||||| |||||| ||| |||||||||||    
T  11642903 gaagatttttcagagattttttgttgtgttttatagtaaatgaaccgagcacactaatttatagaagtttttgtgcgccgtggaccacataaa 11642995  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 20819061 - 20819141
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttgg 127  Q
    |||||||||||| ||||| ||| |||||||| ||||||||||  |||||||| ||||||||| |||| |||||||||||||    
T  20819061 ttgagttagatcatgttgtctttccaactgagatatttatatcaccaaggcaccaagatctaactcatagcaacctcttgg 20819141  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 28547364 - 28547438
Alignment:
Q  50 agttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctct 124  Q
    ||||||||| ||||||||||||| |||| |||||| ||| ||||| | |  ||||||||||||| ||||||||||    
T  28547364 agttagatcttgttgccttgccagctgagatatttctatcgccaatgtatgaagatctagctcatagcaacctct 28547438  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 12304825 - 12304736
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttcatatct 138  Q
    |||||||||||| |||||||||| ||| |||| |||| || | ||  ||| ||||||||||| |||| || ||||||||| |||||||||||    
T  12304825 ttgagttagatcatgttgccttgacaaatgacttattcatctggc--aggaagcaagatctaactcatagaaacctcttgatgttcatatct 12304736  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 19624466 - 19624521
Alignment:
Q  72 aactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttgg 127  Q
    |||||| |||||||||| ||||||||| |||||||||||| | | |||||||||||    
T  19624466 aactgagatatttatatcgccaaggcaacaagatctagctaataacaacctcttgg 19624521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 33554026 - 33553971
Alignment:
Q  192 acacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    ||||| ||||||||| ||||||||||||||| | ||||||||||  ||||||||||    
T  33554026 acactaatttatagatgtttatgtgcgtcgtgggccacataaaccgtcggtgcaat 33553971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 13037315 - 13037392
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttg 126  Q
    ||||||| || | |||||||||||||| ||||||||| || | ||  ||||||||||||||| |||| | ||||||||||    
T  13037315 ttgagtttgagcctgttgccttgccaaatgacatattcatctggc--aggcagcaagatctaactcatatcaacctcttg 13037392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 426861 - 426780
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggt 128  Q
    |||||||||||| ||||||||||||||| || |||||||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  426861 ttgagttagatcatgttgccttgccaacagagatatttatatcgccaaggcaccaagatctggctcatagcaacctcttggt 426780  T

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Target: scaffold0160 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 16904 - 16826
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctctt 125  Q
    |||||||||||| || |||||||||||| || |||||||||| ||||||||| |||||||||||||| |||||||||||    
T  16904 ttgagttagatcttgctgccttgccaaccgagatatttatatcgccaaggcaccaagatctagctcatagcaacctctt 16826  T

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Target: scaffold0039 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 112893 - 113042
Alignment:
Q  96 gcagcaagatctagctcagagcaacctcttggtgttcatatctttcggaagatttttcagaattttttgttgtgttttacaacaaatgaaccaaagacac 195  Q
    ||||||||||||| ||| || ||| ||||||||||| |||||  |||||  |||||||| |||| ||||||| |||||||| ||||| | ||||| ||      
T  112893 gcagcaagatctaactcggaacaatctcttggtgtttatatccgtcggatcatttttcataattctttgttgcgttttacatcaaattagccaaacacgt 112992  T
Q  196 ttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaa 246  Q
     |||||||| ||||| |||||| |||| ||||||| ||| |||||||||||    
T  112993 ctatttatacaagttaatgtgcatcgtggaccaca-aaaatttcggtgcaa 113042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 18639 - 18573
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctca 113  Q
    |||||||||||| || ||||||||||||||| |||||| ||| |||||| || ||||||||||||||    
T  18639 ttgagttagatcttgctgccttgccaactgagatatttctatcgccaagacaccaagatctagctca 18573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 77788 - 77858
Alignment:
Q  63 tgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    ||||||| |||||||||||||| ||||| || |||||||||||| || ||| | |||||||||||||||||    
T  77788 tgccttgtcaactgacatatttctattggcagggcagcaagatcgagttcataacaacctcttggtgttca 77858  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 109832 - 109779
Alignment:
Q  163 tgttgtgttttacaacaaatgaaccaaagacacttatttatagaagtttatgtg 216  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||||    
T  109832 tgttgtgttttacagcaaatgaaccaaacacatttatttataaaagtttttgtg 109779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 61493 - 61437
Alignment:
Q  191 gacacttatttatagaagtttatgtgcgtcgtagaccacataaactttcggtgcaat 247  Q
    |||||||||||||||||||   || ||||| ||||||||||||||| ||||||||||    
T  61493 gacacttatttatagaagtccctgggcgtcctagaccacataaactgtcggtgcaat 61437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 7773 - 7687
Alignment:
Q  47 ttgagttagatcgtgttgccttgccaactgacatatttatattgccaaggcagcaagatctagctcagagcaacctcttggtgttca 133  Q
    |||||||||||| || | ||||||||||| | ||||||||||  |  ||| | || ||||||||||| |||||||||||||| ||||    
T  7773 ttgagttagatcctgctaccttgccaacttagatatttatatccctgaggaaccatgatctagctcatagcaacctcttggtattca 7687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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