View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_11 (Length: 453)
Name: NF6560_low_11
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 40 - 369
Target Start/End: Original strand, 1663618 - 1663947
Alignment:
| Q |
40 |
atattatctacaaacctcctaaacagagaatccagaattagtgccaaaggataagaggatccacaaacctcctaaatggttggataactacgtgggatcc |
139 |
Q |
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| T |
1663618 |
atattatctacaaacctcctaaacagagaagccagaattagtgccaaaggataagaggatccacaaacctcctaaatggttggataactacgtgggatcc |
1663717 |
T |
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| Q |
140 |
cttgaccaatttagaaatttagctaattacagctaccaaatctttttaagaactgctatatcaaa--nnnnnnnnnnnnnnactttctgttatgctatat |
237 |
Q |
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| T |
1663718 |
cttgaccaatttagaaatttagctatttacagctaccaaaacttttaaagaactgctatatcaaatttttcatttttttttactttctgttatgctatgt |
1663817 |
T |
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| Q |
238 |
tatctacaattgtggaaattctgttagtagaaggctctttaaatccctttatcattcaatgaataaagcaaacaaaatagttattcaattatctctctct |
337 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
1663818 |
tatctacaattgtggcaattctgttagtagaaggctctttaaaaccctttatcattcaatgaataaagcaagcaaaatag--attcaattatctctctct |
1663915 |
T |
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| Q |
338 |
aannnnnnngactttcttccttggagttttta |
369 |
Q |
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| T |
1663916 |
gatttttttgactttcttccttggagttttta |
1663947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 22782981 - 22782867
Alignment:
| Q |
219 |
actttctgttatgctatattatctacaattgtggaaattctgttagtagaaggctctttaaatccctttatcattcaatgaataaagcaaacaaaatagt |
318 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |
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| T |
22782981 |
actttttgttatgctatattatctacaattgtggccattctgttagtagaaggctctttaaaaccctttatcattcaatgaataaagtaagcaaaatagt |
22782882 |
T |
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| Q |
319 |
tattcaattatctct |
333 |
Q |
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| T |
22782881 |
tattcaaatatctct |
22782867 |
T |
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