View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_13 (Length: 433)

Name: NF6560_low_13
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_13
NF6560_low_13
[»] chr3 (8 HSPs)
chr3 (47-164)||(34485176-34485292)
chr3 (314-414)||(34484928-34485024)
chr3 (55-164)||(34503009-34503117)
chr3 (52-164)||(27614420-27614531)
chr3 (357-409)||(27616121-27616173)
chr3 (357-409)||(34525787-34525839)
chr3 (357-406)||(34516566-34516615)
chr3 (359-395)||(34373188-34373224)
[»] chr6 (3 HSPs)
chr6 (52-122)||(2902241-2902312)
chr6 (66-122)||(2902168-2902224)
chr6 (65-122)||(2904232-2904290)
[»] chr5 (1 HSPs)
chr5 (59-121)||(14707941-14708003)
[»] scaffold1215 (1 HSPs)
scaffold1215 (357-396)||(64-103)
[»] chr2 (4 HSPs)
chr2 (357-396)||(10526072-10526111)
chr2 (357-404)||(10531014-10531061)
chr2 (357-396)||(10532895-10532934)
chr2 (357-395)||(10524716-10524754)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 34485292 - 34485176
Alignment:
Q  47 cttaaaagcaatattttatataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcactannnnnnnnctcaaccattatttct 146  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  34485292 cttaaaagcaatattttgtataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcacta-tttttttctcaaccattatttct 34485194  T
Q  147 tgagaaatattttcaact 164  Q
    ||||||||||||||||||    
T  34485193 tgagaaatattttcaact 34485176  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 34485024 - 34484928
Alignment:
Q  314 acataaaacagagtcatacagatcaagaattttgttgggttaacattattgtctttctgaatatgataactttcattccaaaatttgaattttgtatagc 413  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34485024 acataaaacagagtcatacaga----gaattttgttgggttaacattattgtctttctgaatatgataactttcattccaaaatttgaattttgtatagc 34484929  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 34503117 - 34503009
Alignment:
Q  55 caatattttatataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcactannnnnnnnctcaaccattatttcttgagaaat 154  Q
    ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||        ||| ||||||||||||||||||||    
T  34503117 caatattttatataaatgaacactctttaatttatctttatctggaagtaaaaagtatattatcacta-tttttttctcgaccattatttcttgagaaat 34503019  T
Q  155 attttcaact 164  Q
    ||||||||||    
T  34503018 attttcaact 34503009  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 27614531 - 27614420
Alignment:
Q  52 aagcaatattttatataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcactannnnnnnnctcaaccattatttcttgaga 151  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||        ||| ||| |||||||||||||    
T  27614531 aagcaatattttatataaattaagactctttaatttatctttatctggaagtaaaaagtatattatcacta-tttttttctcgaccgttatttcttgaga 27614433  T
Q  152 aatattttcaact 164  Q
    |||||||||||||    
T  27614432 aatattttcaact 27614420  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 27616173 - 27616121
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaatttgaattttgta 409  Q
    ||||||| ||||||||||||| | |||||||||||||||  ||||||||||||    
T  27616173 cattattttctttctgaatataaaaactttcattccaaaccttgaattttgta 27616121  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 34525839 - 34525787
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaatttgaattttgta 409  Q
    ||||||| ||||||||||||||| |||||||| ||||||  ||||||||||||    
T  34525839 cattattttctttctgaatatgaaaactttcactccaaaccttgaattttgta 34525787  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 34516615 - 34516566
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaatttgaatttt 406  Q
    ||||||| ||||| ||||||||| |||||||||||||||  |||||||||    
T  34516615 cattattttctttttgaatatgaaaactttcattccaaaccttgaatttt 34516566  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 34373188 - 34373224
Alignment:
Q  359 ttattgtctttctgaatatgataactttcattccaaa 395  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  34373188 ttattgtctttctgaatatgaaaactctcattccaaa 34373224  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 2902312 - 2902241
Alignment:
Q  52 aagcaatat-tttatataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcacta 122  Q
    ||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2902312 aagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagtatattatcacta 2902241  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 2902224 - 2902168
Alignment:
Q  66 ataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcacta 122  Q
    |||||||| || || ||||||||||| ||||||||||||||||||||||||||||||    
T  2902224 ataaattagcactccttaatttatctctatctagaagtaaaaagtatattatcacta 2902168  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 2904290 - 2904232
Alignment:
Q  65 tataaattaacaatctttaatttatctttatctagaagt-aaaaagtatattatcacta 122  Q
    |||||||||||  |||| ||||||| ||||||||||| | |||||||||||||||||||    
T  2904290 tataaattaacgctcttcaatttatatttatctagaaataaaaaagtatattatcacta 2904232  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 14708003 - 14707941
Alignment:
Q  59 attttatataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcact 121  Q
    ||||| |||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  14708003 attttttataaaataataatctttaatttatctttatctataagtaaaaagtataatatcact 14707941  T

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Target: scaffold1215 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 103 - 64
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaa 396  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  103 cattattgtctttctgaatatgaaaactctcattccaaaa 64  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 10526111 - 10526072
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaa 396  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  10526111 cattattgtctttctgaatatgaaaactctcattccaaaa 10526072  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 10531061 - 10531014
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaatttgaatt 404  Q
    |||||||||||||||| |||||| |||||||||||||||  |||||||    
T  10531061 cattattgtctttctggatatgaaaactttcattccaaatcttgaatt 10531014  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 10532934 - 10532895
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaaa 396  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  10532934 cattattgtctttctgaatatgaaaactctcattccaaaa 10532895  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 10524754 - 10524716
Alignment:
Q  357 cattattgtctttctgaatatgataactttcattccaaa 395  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  10524754 cattattgtctttctggatatgaaaactttcattccaaa 10524716  T

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