View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_17 (Length: 400)

Name: NF6560_low_17
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_17
NF6560_low_17
[»] chr2 (7 HSPs)
chr2 (18-229)||(2584268-2584479)
chr2 (116-183)||(2039837-2039904)
chr2 (116-163)||(29962266-29962313)
chr2 (78-111)||(2576897-2576930)
chr2 (78-111)||(2588947-2588980)
chr2 (328-360)||(2584137-2584169)
chr2 (78-111)||(2596022-2596055)
[»] chr7 (8 HSPs)
chr7 (115-229)||(21267068-21267182)
chr7 (115-229)||(48185783-48185897)
chr7 (116-183)||(12527903-12527970)
chr7 (120-183)||(12502269-12502332)
chr7 (116-190)||(26262392-26262466)
chr7 (116-190)||(36018723-36018797)
chr7 (116-183)||(28384885-28384952)
chr7 (116-178)||(16484798-16484860)
[»] chr8 (5 HSPs)
chr8 (116-183)||(3896461-3896528)
chr8 (361-400)||(28535193-28535232)
chr8 (116-186)||(6820331-6820401)
chr8 (121-183)||(44669722-44669784)
chr8 (116-150)||(5536306-5536340)
[»] chr1 (4 HSPs)
chr1 (116-183)||(18154050-18154117)
chr1 (116-183)||(18902779-18902846)
chr1 (361-400)||(22788468-22788507)
chr1 (363-400)||(18431721-18431758)
[»] scaffold0172 (1 HSPs)
scaffold0172 (116-163)||(33832-33879)
[»] chr3 (5 HSPs)
chr3 (116-183)||(1312273-1312340)
chr3 (361-400)||(26555476-26555515)
chr3 (116-183)||(19933565-19933632)
chr3 (361-395)||(52116824-52116858)
chr3 (116-183)||(11034143-11034209)
[»] chr6 (5 HSPs)
chr6 (116-185)||(8910876-8910944)
chr6 (116-183)||(15278677-15278743)
chr6 (360-400)||(16692961-16693001)
chr6 (116-184)||(34517003-34517071)
chr6 (364-400)||(5014179-5014215)
[»] scaffold0655 (1 HSPs)
scaffold0655 (120-184)||(8402-8466)
[»] chr4 (2 HSPs)
chr4 (116-162)||(28653654-28653700)
chr4 (116-150)||(52945670-52945704)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 2584479 - 2584268
Alignment:
Q  18 atagcaaccataagtttctttaaattgataacaaatgttccccagaaggaggatcgacgggtccatggctcttcaactccaatgatcttcatcttcatct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2584479 atagcaaccataagtttctttaaattgataacaaatgttccccggaaggaggatcgacgtgtccatggctcttcaactccaatgatcttcatcttcatct 2584380  T
Q  118 tgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggtcaaaagttttatttttaagaatttatacttt 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2584379 tgttgaaaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggtcaaaagttttgtttttaagaatttatacttt 2584280  T
Q  218 taatgtaagaac 229  Q
    ||||||||||||    
T  2584279 taatgtaagaac 2584268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 2039837 - 2039904
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||  | ||||| ||||||||||    
T  2039837 cttgttgagaaaacttttcacaagcatccagaactttgaccagctaggtgtagtcttaggtaggaaaa 2039904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 29962313 - 29962266
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctagg 163  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||    
T  29962313 cttgttgagaaaacttttcacaagcatctagaactttgaccagctagg 29962266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 2576930 - 2576897
Alignment:
Q  78 gtccatggctcttcaactccaatgatcttcatct 111  Q
    ||||||||||||||||||||||||||||||||||    
T  2576930 gtccatggctcttcaactccaatgatcttcatct 2576897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 2588980 - 2588947
Alignment:
Q  78 gtccatggctcttcaactccaatgatcttcatct 111  Q
    ||||||||||||||||||||||||||||||||||    
T  2588980 gtccatggctcttcaactccaatgatcttcatct 2588947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 2584169 - 2584137
Alignment:
Q  328 atattcatctttggactaagaatttgctaatta 360  Q
    |||||||||||||||||||||||||||||||||    
T  2584169 atattcatctttggactaagaatttgctaatta 2584137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 2596055 - 2596022
Alignment:
Q  78 gtccatggctcttcaactccaatgatcttcatct 111  Q
    ||||||||||||||||||||||| ||||||||||    
T  2596055 gtccatggctcttcaactccaataatcttcatct 2596022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 21267182 - 21267068
Alignment:
Q  115 tcttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggtcaaaagttttatttttaagaatttatac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||  |||| |||||||||    
T  21267182 tcttgttgagaaaacttttcacaagcatccacaactatgaccaactaggatttgtcttgggtaggaaaaggtcaaatgtctgatccttaaaaatttatac 21267083  T
Q  215 ttttaatgtaagaac 229  Q
    |||||||||||||||    
T  21267082 ttttaatgtaagaac 21267068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 48185897 - 48185783
Alignment:
Q  115 tcttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggtcaaaagttttatttttaagaatttatac 214  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||    
T  48185897 tcttgttaagaaaacttttcacaagcatccaccgctatgaccagctaggatttgtcttgggtaggaaaaggtcaaaagtctggttcttaagaatttatac 48185798  T
Q  215 ttttaatgtaagaac 229  Q
    |||||||||||||||    
T  48185797 ttttaatgtaagaac 48185783  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 12527970 - 12527903
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||||  | | ||||||||||||||    
T  12527970 cttgttgagaaaactttttacaagcatccagaactttgaccagctaggtgtagccttgggtaggaaaa 12527903  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 12502332 - 12502269
Alignment:
Q  120 ttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||| |||| |||||| |||| ||||||||||||  | ||||||||||||||||    
T  12502332 ttgagaaaactttttacaatcatccagaactttgaccagctaggtgtagtcttgggtaggaaaa 12502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 26262466 - 26262392
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggtcaaa 190  Q
    ||||||||||||| |||||||||||||||  |||| ||||||| ||||  | ||||||||||| |||||| ||||    
T  26262466 cttgttgagaaaaattttcacaagcatccggaactttgaccagttaggtgtagtcttgggtagaaaaaggccaaa 26262392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 36018723 - 36018797
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggtcaaa 190  Q
    |||||||| ||||||||||||||||||||  |||| |||||||||||   | ||||||||||| |||||| ||||    
T  36018723 cttgttgaaaaaacttttcacaagcatccgaaactttgaccagctagatgtagtcttgggtagaaaaaggccaaa 36018797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 28384885 - 28384952
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||||||||||||||| ||| || | ||||||| ||||  | ||||||||||| ||||    
T  28384885 cttgttgagaaaacttttcacaagcaaccagaattttgaccagttaggtgtagtcttgggtagaaaaa 28384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 16484798 - 16484860
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtag 178  Q
    |||| |||||||||||||| |||||||||  ||||||| ||||||||| ||  ||||||||||    
T  16484798 cttgatgagaaaacttttcgcaagcatccgaaactatggccagctaggtttattcttgggtag 16484860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 3896528 - 3896461
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||  | ||||||||||| ||||    
T  3896528 cttgttgagaaaacttttcacaagcatccaaaactttgaccagctaggtgtagtcttgggtagaaaaa 3896461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 28535193 - 28535232
Alignment:
Q  361 caggggcggatggagtgtgaaacatggtgtggcagctgcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28535193 caggggcggatggagtgtgaaacatggtgtggcagctgcc 28535232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 6820331 - 6820401
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaaggt 186  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||  | || |||||||| |||||||    
T  6820331 cttgttgagaaaacttttcacaagcatccagaactttgaccagttaggtgtagtgttgggtagaaaaaggt 6820401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 44669722 - 44669784
Alignment:
Q  121 tgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    ||||||||||||||||||||||||| |||| ||||||||||||  | ||||||||||| ||||    
T  44669722 tgagaaaacttttcacaagcatccagaactttgaccagctaggtgtagtcttgggtagaaaaa 44669784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 5536340 - 5536306
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaact 150  Q
    |||||||| ||||||||||||||||||||||||||    
T  5536340 cttgttgaaaaaacttttcacaagcatccacaact 5536306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 18154050 - 18154117
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||||  | ||||||||||||||||    
T  18154050 cttgttgacaaaacttttcacaagcatccagaactttgaccagctaggtgtagtcttgggtaggaaaa 18154117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 18902779 - 18902846
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    ||||||||||||||||| |||||||||||| |||  ||||||| ||||  | ||||||||||||||||    
T  18902779 cttgttgagaaaactttccacaagcatccagaaccttgaccagttaggtgtagtcttgggtaggaaaa 18902846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 400
Target Start/End: Complemental strand, 22788507 - 22788468
Alignment:
Q  361 caggggcggatggagtgtgaaacatggtgtggcagctgcc 400  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  22788507 caggggcggatggagtgtgaaacatggtgtggcaactgcc 22788468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 18431758 - 18431721
Alignment:
Q  363 ggggcggatggagtgtgaaacatggtgtggcagctgcc 400  Q
    |||||||||| || ||||||||||||||||||||||||    
T  18431758 ggggcggatgtagagtgaaacatggtgtggcagctgcc 18431721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 33879 - 33832
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctagg 163  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  33879 cttgttgagaaaacttttcacaagcatccagaactttgaccagctagg 33832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 1312273 - 1312340
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||  | ||||||||||| ||||    
T  1312273 cttgttgagaaaacttttcacaagcatctagaactttgaccagctaggtgtagtcttgggtagaaaaa 1312340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 26555476 - 26555515
Alignment:
Q  361 caggggcggatggagtgtgaaacatggtgtggcagctgcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26555476 caggggcggatggagtgtgaaacatggtgtggcagctgcc 26555515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 19933565 - 19933632
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    ||||||||||||| |||||||||||||||| |||  ||||||| ||||  | ||||||||||||||||    
T  19933565 cttgttgagaaaaattttcacaagcatccagaaccttgaccagttaggtgtagtcttgggtaggaaaa 19933632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 52116824 - 52116858
Alignment:
Q  361 caggggcggatggagtgtgaaacatggtgtggcag 395  Q
    |||||||||||||||||||||||||||||||||||    
T  52116824 caggggcggatggagtgtgaaacatggtgtggcag 52116858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 11034209 - 11034143
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||| ||||||||||| ||||| |||| ||||||| ||||  | ||||||||||||||||    
T  11034209 cttgttgagaaa-cttttcacaagtatccagaactttgaccagttaggtgtagtcttgggtaggaaaa 11034143  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 8910876 - 8910944
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaagg 185  Q
    |||||||| |||||||||| |||||||||| |||||||||||| |||| || ||||||||||| ||||||    
T  8910876 cttgttga-aaaacttttcgcaagcatccagaactatgaccagataggtttagtcttgggtagaaaaagg 8910944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 15278677 - 15278743
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaa 183  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||  | ||||||||||| ||||    
T  15278677 cttgttgagaaaacttttcacaagcatctagaact-tgaccagctaggtgtagtcttgggtagaaaaa 15278743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 16692961 - 16693001
Alignment:
Q  360 acaggggcggatggagtgtgaaacatggtgtggcagctgcc 400  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  16692961 acaggggcggattgagtgtgaaacatggtgtggtagctgcc 16693001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 34517071 - 34517003
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaag 184  Q
    |||||||||||||||||||||| ||||||   ||| ||||||||||||  | ||||||||||| |||||    
T  34517071 cttgttgagaaaacttttcacatgcatccggtactttgaccagctaggtgtagtcttgggtagaaaaag 34517003  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 5014215 - 5014179
Alignment:
Q  364 gggcggatggagtgtgaaacatggtgtggcagctgcc 400  Q
    ||||||||| || ||||||||||||||||||||||||    
T  5014215 gggcggatgtagagtgaaacatggtgtggcagctgcc 5014179  T

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Target: scaffold0655 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 8402 - 8466
Alignment:
Q  120 ttgagaaaacttttcacaagcatccacaactatgaccagctaggatttgtcttgggtaggaaaag 184  Q
    |||||||||||||||||||||||||  |||||||||||| |||| ||  |||||||||| |||||    
T  8402 ttgagaaaacttttcacaagcatccggaactatgaccagttaggtttactcttgggtagaaaaag 8466  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 28653700 - 28653654
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaactatgaccagctag 162  Q
    |||||| | ||||||||||||||||||||| |||| |||||||||||    
T  28653700 cttgttaaaaaaacttttcacaagcatccagaactttgaccagctag 28653654  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 52945670 - 52945704
Alignment:
Q  116 cttgttgagaaaacttttcacaagcatccacaact 150  Q
    |||||||||||||||||||||||||||||| ||||    
T  52945670 cttgttgagaaaacttttcacaagcatccagaact 52945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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