View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_20 (Length: 367)
Name: NF6560_low_20
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 5110923 - 5111262
Alignment:
| Q |
11 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
110 |
Q |
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| T |
5110923 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttc |
5111022 |
T |
|
| Q |
111 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5111023 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctc |
5111122 |
T |
|
| Q |
211 |
aattgggaaatctttctttccttgctgttcttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatg |
310 |
Q |
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|||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5111123 |
aattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatg |
5111222 |
T |
|
| Q |
311 |
gttggatttgagtaacaatgattttgttggagaaattcct |
350 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
5111223 |
gttggatttgagtgacaatgattttgttggagaaattcct |
5111262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 5084148 - 5083809
Alignment:
| Q |
11 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |
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| T |
5084148 |
cacagatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttc |
5084049 |
T |
|
| Q |
111 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
5084048 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctc |
5083949 |
T |
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| Q |
211 |
aattgggaaatctttctttccttgctgttcttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatg |
310 |
Q |
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| T |
5083948 |
aattgggaaatctctctttccttgtatttcttgatctacaaggaaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatt |
5083849 |
T |
|
| Q |
311 |
gttggatttgagtaacaatgattttgttggagaaattcct |
350 |
Q |
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| T |
5083848 |
gttgaatttgagcaacaatgattttgttggagaaattcct |
5083809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 5093924 - 5094259
Alignment:
| Q |
15 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
114 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5093924 |
gatgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtctt |
5094023 |
T |
|
| Q |
115 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
5094024 |
catgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaatt |
5094123 |
T |
|
| Q |
215 |
gggaaatctttctttccttgctgttcttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatggttg |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
5094124 |
gggaaatctttctttccttattgttcttgatttacagggcaatagtttccatggtgagttaccacatgagttgcttcagttgaaaagattgaaattgttg |
5094223 |
T |
|
| Q |
315 |
gatttgagtaacaatgattttgttggagaaattcct |
350 |
Q |
| |
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|||| || ||||||||||||||||||||||||||| |
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| T |
5094224 |
aatttaagcaacaatgattttgttggagaaattcct |
5094259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 14427926 - 14427589
Alignment:
| Q |
15 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
14427926 |
gatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctctt |
14427827 |
T |
|
| Q |
115 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaatt |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
14427826 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaatt |
14427727 |
T |
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| Q |
215 |
gggaaatctttctttccttgctgttcttgatctacatcgcaatagtttccatggtgagttaccacatgagttacttcagttg---aagagattgaaatgg |
311 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||| | |
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| T |
14427726 |
aggaaatctctctttccttgttgttcttgatctacatggcaatagtttccatggtgagttaccacatgagttatttcaattgcataatagattgaaaatg |
14427627 |
T |
|
| Q |
312 |
ttggatttgagtaacaatgattttgttggagaaattcc |
349 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
14427626 |
ttggatttgagcaacaatgattttgttggagaaattcc |
14427589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 16872369 - 16872553
Alignment:
| Q |
14 |
agatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaat---tggtcaatttcatcttctacttcttctttg |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||| | |
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| T |
16872369 |
agatgaattttcacttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctacttctt---tc |
16872465 |
T |
|
| Q |
111 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
198 |
Q |
| |
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|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
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| T |
16872466 |
tcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 16873359 - 16873519
Alignment:
| Q |
190 |
ttgaaggtacaatttctcctcaattgggaaatctttctttccttgctgttcttgatctacatcgcaatagtttccatggtgagttaccacatgagttact |
289 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||||||| | ||||||| ||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
| Q |
290 |
tcagttgaagagattgaaatggttggatttgagtaacaatgattttgttggagaaattcct |
350 |
Q |
| |
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||| || ||||| |||| | || || ||||| |||||||||||||||||||||||||| |
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| T |
16873459 |
tcatctgcagagactgaagagattagacttgagctacaatgattttgttggagaaattcct |
16873519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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