View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_23 (Length: 345)
Name: NF6560_low_23
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 44925855 - 44925548
Alignment:
| Q |
20 |
aaaactgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgtataagataa |
119 |
Q |
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| T |
44925855 |
aaaactgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaagtcattctcaacattcttgatgtataagataa |
44925756 |
T |
|
| Q |
120 |
cagaatcagtttccaatatagaaagcaagacctgnnnnnnnnttacaattgtgttgcttgttaaaattgaaattgaacaatgtcaccgaaatttcgtcaa |
219 |
Q |
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| T |
44925755 |
cagaatcagtttccaatatagaaagcaagacctgaaaaaaaattacaattgtgttgcttgttaaaatttaaattgaacaatgtcaccgcaatttcgtcaa |
44925656 |
T |
|
| Q |
220 |
ctataatgttttctttgatt-nnnnnnnntttaagctttgaaaagctttcggtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaa |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44925655 |
ctataatgttttctttgattcaaaaaaaatttaagctttgaaaagccttcagtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaa |
44925556 |
T |
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| Q |
319 |
acagacac |
326 |
Q |
| |
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|||||||| |
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| T |
44925555 |
acagacac |
44925548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 44934009 - 44933879
Alignment:
| Q |
23 |
actgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgtataagataacag |
122 |
Q |
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| T |
44934009 |
actgatcctgaaagtttatttaatgtcttttggaacaatctgtacatccttggtgatccaagaaagaccttctcaacattcttgatgtataaaataacag |
44933910 |
T |
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| Q |
123 |
aatcagtttccaatatagaaagcaagacctg |
153 |
Q |
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| T |
44933909 |
aaccagcttctgatatagaaaccaagacctg |
44933879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 44933759 - 44933713
Alignment:
| Q |
273 |
atataatcaccttgtagagtgaatctaggagacgcttttcatcaaaa |
319 |
Q |
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|||||||||||||||||||||||| ||||| | |||||||||||||| |
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| T |
44933759 |
atataatcaccttgtagagtgaatgtaggaaaagcttttcatcaaaa |
44933713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 32196598 - 32196527
Alignment:
| Q |
248 |
tttaagctttgaaaagctttcggtgatataatcaccttgtagagtgaatctaggagacgcttttcatcaaaa |
319 |
Q |
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|||||||| ||||||||||| |||||||||||||||| |||||||| |||| || ||||||||| ||||| |
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| T |
32196598 |
tttaagctatgaaaagcttttagtgatataatcaccttatagagtgagtctatgaagcgcttttcaacaaaa |
32196527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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