View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_24 (Length: 342)
Name: NF6560_low_24
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 45694756 - 45694434
Alignment:
| Q |
7 |
gtttgaaacctttggagccgaaatctcttgagaaaaacactactgtttctacttctgcttgcaaagaagatgtatccaaagttgatcaaacttccaatca |
106 |
Q |
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| T |
45694756 |
gtttgaaacctttggagccgaaatctcttgagaaaaacactactgtttctacttctgcttgcaaagaagatgtatccaaagttgatcaaacttccaatca |
45694657 |
T |
|
| Q |
107 |
agttcttagtgagagtagcagaaaaggtcaagaagtttttaaaaaatgtacggagctaacagtagcctcttcctctgtttgctctgacaatggcgtgcat |
206 |
Q |
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| T |
45694656 |
agttcttagtgagagtagcagaaaaggtcaagaagtttttaaaaaatgtacggagctaacagtagcctcttcctctgtttgctctgacaatggcgtgcat |
45694557 |
T |
|
| Q |
207 |
agaagttcagatgatgctaatcaaaatttgaagcgaaaaaatctggactctgaggattctgagtggcacagtgaagtaaatatcttataattaagttgtc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45694556 |
agaagttcagatgatgctaatcaaaatttgaagcgaaaaaatctggactctgaggattctgagtggcacagtgaagtaaatatcttataattaagttgtc |
45694457 |
T |
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| Q |
307 |
ctatttcttgaattatcttatga |
329 |
Q |
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||||||||||||||||||||||| |
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| T |
45694456 |
ctatttcttgaattatcttatga |
45694434 |
T |
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