View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6560_low_26 (Length: 316)
Name: NF6560_low_26
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_26 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 942470 - 942188
Alignment:
| Q |
17 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
116 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
942470 |
cacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttg |
942371 |
T |
|
| Q |
117 |
atgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942370 |
atgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
942271 |
T |
|
| Q |
217 |
ttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgtcaattgcaagttcaatttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
942270 |
ttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgtgaattgcaagttcaatttt |
942188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 971740 - 971458
Alignment:
| Q |
17 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
116 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
971740 |
cacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttg |
971641 |
T |
|
| Q |
117 |
atgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971640 |
atgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
971541 |
T |
|
| Q |
217 |
ttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgtcaattgcaagttcaatttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
971540 |
ttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttgtgaattgcaagttcaatttt |
971458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 949459 - 949197
Alignment:
| Q |
17 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
949459 |
cacttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
949360 |
T |
|
| Q |
117 |
atgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
949359 |
atgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccaatttgt |
949260 |
T |
|
| Q |
217 |
ttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
949259 |
ttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttg |
949197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 960431 - 960169
Alignment:
| Q |
17 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
116 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960431 |
cacttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
960332 |
T |
|
| Q |
117 |
atgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960331 |
atgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgt |
960232 |
T |
|
| Q |
217 |
ttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
960231 |
ttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttg |
960169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 936551 - 936302
Alignment:
| Q |
16 |
tcacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcaccttt |
115 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
936551 |
tcacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctccttt |
936452 |
T |
|
| Q |
116 |
gatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttg |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||||||||| ||| | || ||||||||||||||| ||| ||| || |||||||| | |||| |
|
|
| T |
936451 |
gatgccattttcttcacactcacttattgtgttcttcacaatttcagattcttctgttccttccttgatggagaacaagttaaggatgttttcaactttg |
936352 |
T |
|
| Q |
216 |
tttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgc |
265 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
936351 |
cttgaagaaaaaggtattgaattagcaacttctttaggcaagaattttgc |
936302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 909799 - 909573
Alignment:
| Q |
18 |
acttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttga |
117 |
Q |
| |
|
|||||||| |||| || |||||||||||||| || ||| || |||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
909799 |
acttctgttgaaacagtgtcaacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttga |
909700 |
T |
|
| Q |
118 |
tgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtt |
217 |
Q |
| |
|
| |||| ||||||||| ||||||||||| | ||||||||||||| |||| | ||||||| ||||||||| || | ||| || |||||||||| |||||| |
|
|
| T |
909699 |
taccatatgcttcacattcacttattgtgttcttcacaatttcagattccgtcgatccttgcttgatggagaagtagttaaggatgttttccaatttgtt |
909600 |
T |
|
| Q |
218 |
tgatgaaaagggtatggaattagcaac |
244 |
Q |
| |
|
|||||||||||| |||||||| ||||| |
|
|
| T |
909599 |
tgatgaaaagggaatggaattcgcaac |
909573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 975357 - 975127
Alignment:
| Q |
16 |
tcacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcaccttt |
115 |
Q |
| |
|
|||||||||| |||| ||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
975357 |
tcacttctgttgaaacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctccttt |
975258 |
T |
|
| Q |
116 |
gatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttg |
215 |
Q |
| |
|
||| || | ||||||||||||| || || | |||||||| | | | ||||||| |||| ||||||| |||||||||| ||||| |||||| ||| |
|
|
| T |
975257 |
gatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccatcttg |
975158 |
T |
|
| Q |
216 |
tttgatgaaaagggtatggaattagcaactt |
246 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
975157 |
tttgatgaaaagggtattgaattagcaactt |
975127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 419804 - 420034
Alignment:
| Q |
16 |
tcacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcaccttt |
115 |
Q |
| |
|
|||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
419804 |
tcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctccttt |
419903 |
T |
|
| Q |
116 |
gatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttg |
215 |
Q |
| |
|
||| || | ||||||||||||| || || | |||||||| | | | ||||||| |||| ||||||| |||||||||| ||||| ||||| ||| |
|
|
| T |
419904 |
gatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccaccttg |
420003 |
T |
|
| Q |
216 |
tttgatgaaaagggtatggaattagcaactt |
246 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| |
|
|
| T |
420004 |
tttaatgaaaaaggtattgaattagcaactt |
420034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 924334 - 924081
Alignment:
| Q |
16 |
tcacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcaccttt |
115 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| || || ||||| ||||||||| ||||||||| |||| |
|
|
| T |
924334 |
tcacttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctccttc |
924235 |
T |
|
| Q |
116 |
gatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttg |
215 |
Q |
| |
|
||| || |||||| || || || |||||||||||||| |||| ||||||| ||||||||| || | ||| || |||||||||| |||| |
|
|
| T |
924234 |
gatagcaggcatttcacaactaccaatggtgtttttcacaatttcatattccgccgatccttgcttgatggagaagtagttaaggatgttttccactttg |
924135 |
T |
|
| Q |
216 |
tttgatgaaaagggtatggaattagcaacttctttaggcaagaattttgctcca |
269 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
924134 |
tttgatgaaaatggtatggaattagcaacttcacgaggcaagaatgttgctcca |
924081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 916280 - 916031
Alignment:
| Q |
19 |
cttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgat |
118 |
Q |
| |
|
||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| ||||||||| ||||||||| |||| ||| |
|
|
| T |
916280 |
cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctccttcgat |
916181 |
T |
|
| Q |
119 |
gccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgttt |
218 |
Q |
| |
|
| | |||||| | || || | | ||||| | |||||| |||| |||||||| ||||||||| || | || || |||||||||| ||||||| |
|
|
| T |
916180 |
agtaggcgtttcacaataaccaatggcttgtttcaaattttcagattccgctgatccttgcttgatggagaagtaattaaggatgttttccactttgttt |
916081 |
T |
|
| Q |
219 |
gatgaaaagggtatggaattagcaacttctttaggcaagaattttgctcc |
268 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
916080 |
gatgaaaatggtatggaattagcgacttcacgaggcaagaatgttgctcc |
916031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 101 - 247
Target Start/End: Complemental strand, 902002 - 901854
Alignment:
| Q |
101 |
cttttcctcacctttgatgccatttgcttcacactcact-tattgttctt-ttcacaatttcagcttcctttgatccttccttgatggaaaacttgttga |
198 |
Q |
| |
|
||||| ||| ||||||||| ||||| ||||||||||||| || || | || |||||||||| || || |||||||||| |||||||||||| | ||| | |
|
|
| T |
902002 |
cttttgctctcctttgatgtcattttcttcacactcactataatggtattcttcacaattttagactcttttgatccttgcttgatggaaaagtggttaa |
901903 |
T |
|
| Q |
199 |
gtatgttttccattttgtttgatgaaaagggtatggaattagcaacttc |
247 |
Q |
| |
|
| || ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
901902 |
ggattttttccactttgtttgatgaaaagggaatggaattagcaacttc |
901854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 10767 - 10537
Alignment:
| Q |
16 |
tcacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcaccttt |
115 |
Q |
| |
|
|||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
10767 |
tcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctccttt |
10668 |
T |
|
| Q |
116 |
gatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttg |
215 |
Q |
| |
|
||| || | ||||||||||||| || || | |||||||| | | | ||||||| |||| ||||||| |||||||||| ||||| ||||| ||| |
|
|
| T |
10667 |
gatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccaccttg |
10568 |
T |
|
| Q |
216 |
tttgatgaaaagggtatggaattagcaactt |
246 |
Q |
| |
|
||| ||||||| ||||| ||||||||||||| |
|
|
| T |
10567 |
tttaatgaaaaaggtattgaattagcaactt |
10537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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