View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_28 (Length: 304)
Name: NF6560_low_28
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 10982828 - 10982543
Alignment:
| Q |
1 |
attctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10982828 |
attctgcttccacaactgagccaacttattcaaagcgacaagggaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataatt |
10982729 |
T |
|
| Q |
101 |
tgtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttcca |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10982728 |
tgtctaatctctttccccttatcggagtccattaattccttaatttgatcccctaactcggttccactcacaaacccgtcttttgaatccttcaattcca |
10982629 |
T |
|
| Q |
201 |
aagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcactccttca |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10982628 |
aagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttgttctgcatacaatggccatgccaccataggcactccttca |
10982543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 10968877 - 10968593
Alignment:
| Q |
2 |
ttctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataattt |
101 |
Q |
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|||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10968877 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
10968778 |
T |
|
| Q |
102 |
gtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
201 |
Q |
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| T |
10968777 |
tcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
10968678 |
T |
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| Q |
202 |
agcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccatacaatggccatgccaccataggcactccttca |
286 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
10968677 |
agcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttca |
10968593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 286
Target Start/End: Complemental strand, 11003010 - 11002773
Alignment:
| Q |
49 |
tccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcga |
148 |
Q |
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||||||| || || ||| ||| ||||||||| |||||||||| ||||| | | |||||||||||||||||| || || ||||| || ||||||| || |
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| T |
11003010 |
tccacctcctccttttgcctccttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctc |
11002911 |
T |
|
| Q |
149 |
tcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgtt |
248 |
Q |
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||||| ||||| |||||||||||||||| | |||||| | || ||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |
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| T |
11002910 |
tcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgtt |
11002811 |
T |
|
| Q |
249 |
ctccatacaatggccatgccaccataggcactccttca |
286 |
Q |
| |
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|| ||||||| |||||||| | |||||||||||||||| |
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| T |
11002810 |
ctgcatacaaaggccatgcaatcataggcactccttca |
11002773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 11080177 - 11079996
Alignment:
| Q |
23 |
aacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttat |
122 |
Q |
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||||| |||||| | ||||| ||| ||||||| || |||||| || |||||||||||||||||||| ||||| | | ||||| ||||||||| || | |
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| T |
11080177 |
aactttttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcacttattttcatcttcaaaattgtctctctaacctctttcccctttt |
11080078 |
T |
|
| Q |
123 |
cggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagc |
204 |
Q |
| |
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| || ||||| || ||||||| || ||||| ||||| || ||||||||||||| |||||||| || |||| ||||||||| |
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| T |
11080077 |
ctgattccatcaactccttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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