View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_29 (Length: 304)
Name: NF6560_low_29
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 29302639 - 29302925
Alignment:
| Q |
1 |
tagtaacaccatttttagacacgagacatgtcaaagtatcgacaatgacatgttatggtgctgaagttatatgattgcttggacgggcaaagcatgctcc |
100 |
Q |
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| T |
29302639 |
tagtaacaccatttttagacacgagacatgtcaaagtatcgacaatgacatgttatggtgctgaagttatatgattgcttggacgggcaaagcatgctcc |
29302738 |
T |
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| Q |
101 |
tctatgtattgaacaatttgttttatattttgaataggcattaagcaatgaaaatctcatagacacattatgatgtgattaattaagtgttaaactatga |
200 |
Q |
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| T |
29302739 |
tctatgtattgaacaatttgttttatattttgaataggcattaagcaatgagaatctcatagacacattatgatgtgattaattaagtgttaaactatga |
29302838 |
T |
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| Q |
201 |
ttattgatcagtgtattttgtgccgtggtgtacactatattgtattaaaattctttgtcaatgacacaaacttcaaatgcaattcct |
287 |
Q |
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| T |
29302839 |
ttattgatcagtgtattttgtgccgtggtgtaaactatattgtattaaaattctttgtcaatgacacaaacttcaaatgcaattcct |
29302925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 29308774 - 29308890
Alignment:
| Q |
18 |
gacacgagacatgtcaaagtatcgacaatgacatgttatggtgctgaagttatatgattgcttggacgggcaaagcatgctcctctatgtattgaacaat |
117 |
Q |
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| T |
29308774 |
gacacgagacatgtcaa-gtatcgacagtgacaagttatgatgctaaaattatatgattgtttggatgggcaaagaaagctcctccatctattgaacaaa |
29308872 |
T |
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| Q |
118 |
ttgttttatattttgaat |
135 |
Q |
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| T |
29308873 |
ttgttttatattttgaat |
29308890 |
T |
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