View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_3 (Length: 573)
Name: NF6560_low_3
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 71 - 556
Target Start/End: Complemental strand, 45598052 - 45597572
Alignment:
| Q |
71 |
ctggcctctctcaatgaccctattttgagattcttattgagaagcttcaattttaagtaaactattgacttcaacaattttttatttaaattttccaatt |
170 |
Q |
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| T |
45598052 |
ctggcctctctcaatgaccctattttgagattcttattgagaagcttcaattttaagtaaactattgacttcaacaatgttttatttaaattttccaatt |
45597953 |
T |
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| Q |
171 |
ttggttcacgcttttctctaggcacttaatctatctatctattaccacccataagagaaattttttcatagacacaatccaaattgaaattgttaggcac |
270 |
Q |
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| T |
45597952 |
ttggttcacgcttttctctaggcacttaatctgtctatctattaccacccataagagaaattttttcatagacacaatccaaattgaaattgttaggcac |
45597853 |
T |
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| Q |
271 |
accctcaaatgaaattnnnnnnnnnnnnnnnnnntatttagtcaccatcaatattgtgcccaaatatatttatttagacacaagtatatctctatgcgta |
370 |
Q |
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| T |
45597852 |
accctcaaatgaaattagaaaaaa----------tatttagtcaccatcaatattgtgcccaaatatatttatttagacacaagtatatctctatgcgta |
45597763 |
T |
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| Q |
371 |
attgtttatttatattattgcatatagttagaaaaatttgatattt-----agactaaatatcttattaatcgaaatgttttttgttaaattgaaaatgt |
465 |
Q |
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| T |
45597762 |
attgtttatttatattattgcatatagttagaaaaaattgatatttctgttagactaaatgtcttattaatcgaaatgttttttgttaaattgaaaatgt |
45597663 |
T |
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| Q |
466 |
gacagtttcgtaacctgcaaagctggacccgagagcttgttccaccccattcatctaaggctccaccgtctgctcccaaggtcttgtattt |
556 |
Q |
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| T |
45597662 |
gacagtttcgtaaccttcaaagctggacccgagagtttgttccaccccattcatctaaggctccaccctctgctcccaaggtcttgtattt |
45597572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 42794449 - 42794374
Alignment:
| Q |
470 |
gtttcgtaacctgcaaagctggacccgagagcttgttccaccccattcatctaaggctccaccgtctgctcccaag |
545 |
Q |
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| T |
42794449 |
gtttcgtaacctgcaaagcttgacccgagagcttgttccaccccattcatctaaggctccaccctctgctcccaag |
42794374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 19398246 - 19398171
Alignment:
| Q |
470 |
gtttcgtaacctgcaaagctggacccgagagcttgttccaccccattcatctaaggctccaccgtctgctcccaag |
545 |
Q |
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| T |
19398246 |
gtttcgtaacctgcaaagcttgacccgagagcttgttccaccccattcatctaaggctccaccctctgttcccaag |
19398171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 469 - 545
Target Start/End: Complemental strand, 13510283 - 13510207
Alignment:
| Q |
469 |
agtttcgtaacctgcaaagctggacccgagagcttgttccaccccattcatctaaggctccaccgtctgctcccaag |
545 |
Q |
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| T |
13510283 |
agtttcgtaaccagcaaagcttgacccgagagcttgttccaccccattcatttaaggctccaccctctgctcccaag |
13510207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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