View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6560_low_30 (Length: 283)
Name: NF6560_low_30
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 2664670 - 2664422
Alignment:
| Q |
16 |
atgggcacaaaagaatcttgtgtatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatg |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2664670 |
atgggcacaaaagaatcttgtatatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggttgatctgaaccttcccaaaaaattcaatg |
2664571 |
T |
|
| Q |
116 |
agatctcggattcgacaaatcaaaatgggaatagcccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgcttt-ccccatgag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2664570 |
agatctcggattcgacaaatcaaaatgggaatagcccattaatcttgcaattttcgattaccatgtccactaatagtttggagtcgctttcccccatgag |
2664471 |
T |
|
| Q |
215 |
ttgcnnnnnnnccttttcttctggctattcttaagcaatcatacatgccc |
264 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
2664470 |
ttgc-aaaaatccttgtcttctggctattcttaagccatcatacatgccc |
2664422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 3282007 - 3281838
Alignment:
| Q |
38 |
tatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatca |
137 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||| ||||| |||| ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
3282007 |
tatgcagctaaccaatccgcacttctgtttccttcacgtaaggtgtggtttatctaaacctccccagaaagttcaatgagatatcggattcgacgaatca |
3281908 |
T |
|
| Q |
138 |
aa--atgggaatag-cccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc |
207 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||| ||||||||||||| || |||||| ||| ||||||| |
|
|
| T |
3281907 |
aaacatgg---tagccccattaatcttgcaatttcacgttaccatgtccagtagcagtttgaagttgctttcc |
3281838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 9469088 - 9468918
Alignment:
| Q |
38 |
tatgcaactaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatca |
137 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| | |||||| ||||||||||||||| |||| || ||||||||||||||||||||||| |||| |
|
|
| T |
9469088 |
tatgcagctaaccaaactgcacttctgttttattcacgcaaggtgtggtttatctgaacctccccaggaagttcaatgagatctcggattcgacggatca |
9468989 |
T |
|
| Q |
138 |
aaatgggaatag-cccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc |
207 |
Q |
| |
|
|| ||| |||| |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9468988 |
gaacggggatagccccattaatcttgcaatttcatgttaccatgtccactagcagtttggaatcgctttcc |
9468918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 17347894 - 17347732
Alignment:
| Q |
46 |
taaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatcaaaatggga |
145 |
Q |
| |
|
||||||||| ||||| ||||| ||||| | |||||| ||||||| ||||||| || | || |||||| ||||||||||||| || |||||| ||||| |
|
|
| T |
17347894 |
taaccaattttcacttttgtttccttcatgcaaggtgtggtttatttgaacctccctaggaagttcaatcagatctcggattcaacgaatcaacatgggg |
17347795 |
T |
|
| Q |
146 |
atag-cccattaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc |
207 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17347794 |
atagccccattaatcttgaaattttatgttacaatgtccactagcagtttggagtcgctttcc |
17347732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 36275856 - 36275693
Alignment:
| Q |
45 |
ctaaccaattcgcacttctgttttcttcaagtaaggtgaggtttatctgaaccttcccaaaaaattcaatgagatctcggattcgacaaatcaaaatggg |
144 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| | || ||| |||||||||| ||| ||||| ||||||||| |||||||| |||| || ||| | || ||| |
|
|
| T |
36275856 |
ctaaccaatccgcacatctgtttccttcacgaaatgtgtggtttatctgcaccaccccaagaaattcaataagatctcgtattcaacgaataagaacggg |
36275757 |
T |
|
| Q |
145 |
aatagccc-attaatcttgcaatttccggttaccatgtccactaatagtttggagtcgctttcc |
207 |
Q |
| |
|
|||||| ||||||||| ||||| || |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
36275756 |
ggtagccccattaatcttacaattacctgttaccatgtccactagaagtttggagtcactttcc |
36275693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University