View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_32 (Length: 275)

Name: NF6560_low_32
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_32
NF6560_low_32
[»] chr7 (2 HSPs)
chr7 (92-236)||(16849993-16850137)
chr7 (89-237)||(31738886-31739034)
[»] chr4 (4 HSPs)
chr4 (89-237)||(34967086-34967234)
chr4 (89-236)||(9117438-9117585)
chr4 (93-236)||(54207235-54207378)
chr4 (95-237)||(27742786-27742928)
[»] chr3 (4 HSPs)
chr3 (92-236)||(11031675-11031819)
chr3 (93-236)||(46920105-46920248)
chr3 (95-236)||(18319605-18319746)
chr3 (92-233)||(52126339-52126480)
[»] chr1 (2 HSPs)
chr1 (90-234)||(51083355-51083499)
chr1 (93-236)||(38006998-38007141)
[»] chr8 (2 HSPs)
chr8 (96-236)||(11465584-11465724)
chr8 (95-236)||(3428480-3428621)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 16850137 - 16849993
Alignment:
Q  92 tagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatact 191  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  16850137 tagggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacc 16850038  T
Q  192 tgggaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  16850037 tgggaacaaattatacccaggaaaatttttaacccatgatctccc 16849993  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 31739034 - 31738886
Alignment:
Q  89 acttagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatat 188  Q
    ||||||| ||||||||||||| |||||||||||||||| ||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31739034 acttaggaggtgtttgtttccaggttataaaatttatttcttaaaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatat 31738935  T
Q  189 acttgggaacaaattatacccacgaaaaattttaacccatgatctcccc 237  Q
    || ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  31738934 acctgggaacaaattatacccaggaaattttttaacccatgatctcccc 31738886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 34967086 - 34967234
Alignment:
Q  89 acttagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatat 188  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  34967086 acttagggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatat 34967185  T
Q  189 acttgggaacaaattatacccacgaaaaattttaacccatgatctcccc 237  Q
    || ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  34967186 acctgggaacaaattatacccaggaaaatttttaacccatgatctcccc 34967234  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 9117438 - 9117585
Alignment:
Q  89 acttagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatat 188  Q
    |||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9117438 actttgggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatat 9117537  T
Q  189 acttgggaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  9117538 acctgggaacaaattatacccaggaaaatttttaacccatgatctccc 9117585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 54207235 - 54207378
Alignment:
Q  93 agggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatactt 192  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  54207235 agggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 54207334  T
Q  193 gggaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  54207335 gggaacaaattatacccaggaaaatttttaacccatgatctccc 54207378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 27742928 - 27742786
Alignment:
Q  95 ggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatacttgg 194  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  27742928 ggggtgtttgtttccaggttataaaatttattcttgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 27742829  T
Q  195 gaacaaattatacccacgaaaaattttaacccatgatctcccc 237  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||    
T  27742828 gaacagattatacccatgaaaatttttaacccatgatctcccc 27742786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 11031819 - 11031675
Alignment:
Q  92 tagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatact 191  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  11031819 tagggggtgtttgtttccaggttataaaatttatttctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacc 11031720  T
Q  192 tgggaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  11031719 tgggaacaaattatacccaggaaaatttttaacccatgatctccc 11031675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 46920105 - 46920248
Alignment:
Q  93 agggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatactt 192  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  46920105 agggggtgtttgtttccatgttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 46920204  T
Q  193 gggaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  46920205 gggaacaaattatacccaggaaaatttttaacccatgatctccc 46920248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 18319605 - 18319746
Alignment:
Q  95 ggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatacttgg 194  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  18319605 ggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 18319704  T
Q  195 gaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  18319705 gaacaaattatacccaggaaattttttaacccatgatctccc 18319746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 52126480 - 52126339
Alignment:
Q  92 tagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatact 191  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||     
T  52126480 tagggggtgtttgtttccaggttataaaatttattccttggaatatgaggatgggaatgcactttcccatgtttggtagaaggtacaagaaaaatatacc 52126381  T
Q  192 tgggaacaaattatacccacgaaaaattttaacccatgatct 233  Q
    ||| ||||||||||||||| ||||| ||||||||||||||||    
T  52126380 tggaaacaaattatacccaggaaaatttttaacccatgatct 52126339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 51083355 - 51083499
Alignment:
Q  90 cttagggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatata 189  Q
    ||||||||||||||||||||  ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51083355 cttagggggtgtttgtttccaagttataaaatttattccttggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatata 51083454  T
Q  190 cttgggaacaaattatacccacgaaaaattttaacccatgatctc 234  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  51083455 cttgggaacaaattatacccaggaaaatttttaacccatgatctc 51083499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 38006998 - 38007141
Alignment:
Q  93 agggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatactt 192  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  38006998 agggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 38007097  T
Q  193 gggaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  38007098 gggaacaaattatacccaggaaaatttttaacccatgatctccc 38007141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 11465584 - 11465724
Alignment:
Q  96 gggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatacttggg 195  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  11465584 gggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctggg 11465683  T
Q  196 aacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  11465684 aacaaattatacccatgaaaatttttaacccatgatctccc 11465724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 3428480 - 3428621
Alignment:
Q  95 ggggtgtttgtttccgggttataaaatttattactgggaatatgaggatgggaatgctctttcccatgtttggtagaaggtaaaagaaaaatatacttgg 194  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  3428480 ggggtgtttgtttccaggttataaaatttattcctggaaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 3428579  T
Q  195 gaacaaattatacccacgaaaaattttaacccatgatctccc 236  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  3428580 gaacaaattatacccaggaaaatttttaacctatgatctccc 3428621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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