View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_34 (Length: 269)

Name: NF6560_low_34
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_34
NF6560_low_34
[»] chr1 (2 HSPs)
chr1 (1-252)||(31322301-31322552)
chr1 (175-252)||(31321268-31321345)
[»] chr8 (1 HSPs)
chr8 (183-234)||(27823712-27823763)
[»] chr5 (3 HSPs)
chr5 (180-250)||(38997568-38997638)
chr5 (181-236)||(28804602-28804657)
chr5 (188-252)||(28803991-28804055)
[»] chr4 (1 HSPs)
chr4 (175-226)||(8331535-8331586)
[»] chr7 (3 HSPs)
chr7 (182-227)||(3704689-3704734)
chr7 (181-227)||(35711352-35711398)
chr7 (175-227)||(28099210-28099262)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 31322552 - 31322301
Alignment:
Q  1 tagagtttgatgcatgttgatattagtttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322552 tagagtttgatgcatgttgatattagtttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggat 31322453  T
Q  101 catggggctaggggtgcatacgactaagatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322452 catggggctaggggtgcatacgactaagatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttc 31322353  T
Q  201 ttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacacct 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31322352 ttccatcttcttcgtgtctttcttcctttatttttatcttagtcgcacacct 31322301  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 31321268 - 31321345
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacacct 252  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| ||||||| | |||||||    
T  31321268 aaattaaaatttaaaaaccttggtccttccatctttttcctgtctttcttcctctattttcatcttagccgcacacct 31321345  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 27823712 - 27823763
Alignment:
Q  183 atttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttt 234  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27823712 atttaaaaaccttggttcttccatcttcttcttgtctttcttccttcatttt 27823763  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 38997568 - 38997638
Alignment:
Q  180 aaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacac 250  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||  ||||| ||||||||| |||||    
T  38997568 aaaatttaaaaaccttggttcttccatctttttcctgtttttcttcctccattttcatcttagtcgcacac 38997638  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 28804657 - 28804602
Alignment:
Q  181 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttattttta 236  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||  |||||||    
T  28804657 aaatttaaaaatcttagttcttccatcttctttttgtctttcttcctccattttta 28804602  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 28803991 - 28804055
Alignment:
Q  188 aaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacacct 252  Q
    ||||||||| |||||||||||| ||| | ||||||||| |  ||||| ||||||||| |||||||    
T  28803991 aaaaccttgattcttccatctttttcctatctttcttcgtcaattttcatcttagtcgcacacct 28804055  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 8331535 - 8331586
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 226  Q
    ||||| |||||||||||| |||||||||||||||||||  ||||||||||||    
T  8331535 aaattcaaatttaaaaactttggttcttccatcttcttgttgtctttcttcc 8331586  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 3704689 - 3704734
Alignment:
Q  182 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcct 227  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||    
T  3704689 aatttaaaaacattggctcttccatcttcttcatgtctttcttcct 3704734  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 35711398 - 35711352
Alignment:
Q  181 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcct 227  Q
    |||||||||||| || || |||||||||||||| |||||||||||||    
T  35711398 aaatttaaaaacttttgtccttccatcttcttcatgtctttcttcct 35711352  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 28099210 - 28099262
Alignment:
Q  175 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcct 227  Q
    ||||| |||||||||||| ||  || ||||||||||||| |||||||||||||    
T  28099210 aaattcaaatttaaaaacttttatttttccatcttcttcttgtctttcttcct 28099262  T

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