View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_35 (Length: 259)
Name: NF6560_low_35
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 4976844 - 4977071
Alignment:
| Q |
15 |
aatataaatcttgcgtgtaagatgaaatcatccattacgtacccttctcttgtatcacgttttctcactgtttatgtttgcatgtgcaccgtgtccccta |
114 |
Q |
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| T |
4976844 |
aatataaatcttgcgtgtaagatgaaatcatccattacgtacccttctcttgtgtcacgttttctcactgtttatgtttgcatgtgcaccgtgtcccctg |
4976943 |
T |
|
| Q |
115 |
aaacataaaccatctttaattttacacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4976944 |
aaacataaaccatctttaattttacacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattg |
4977043 |
T |
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| Q |
215 |
cttcttcttctccaacacttctcaaact |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4977044 |
cttcttcttctccaacacttctcaaact |
4977071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 4994751 - 4994978
Alignment:
| Q |
15 |
aatataaatcttgcgtgtaagatgaaatcatccattacgtacccttctcttgtatcacgttttctcactgtttatgtttgcatgtgcaccgtgtccccta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994751 |
aatataaatcttgcgtgtaagatgaaatcatccattacgtacccttctcttgtgtcacgttttctcactgtttatgtttgcatgtgcaccgtgtcccctg |
4994850 |
T |
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| Q |
115 |
aaacataaaccatctttaattttacacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994851 |
aaacataaaccatctttaattttacacacaattctgactatgtacactctcatgtcactccaaaatagattgatgatgtaatattgaaccgacattattg |
4994950 |
T |
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| Q |
215 |
cttcttcttctccaacacttctcaaact |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4994951 |
cttcttcttctccaacacttctcaaact |
4994978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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