View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_37 (Length: 257)

Name: NF6560_low_37
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_37
NF6560_low_37
[»] chr6 (17 HSPs)
chr6 (133-249)||(25096552-25096668)
chr6 (1-76)||(9024145-9024220)
chr6 (1-76)||(12696339-12696414)
chr6 (1-54)||(9025485-9025538)
chr6 (1-49)||(29049900-29049946)
chr6 (14-74)||(3398646-3398706)
chr6 (1-41)||(7569172-7569212)
chr6 (1-45)||(13364705-13364749)
chr6 (3-50)||(20576628-20576675)
chr6 (1-43)||(7265595-7265637)
chr6 (1-43)||(20518360-20518402)
chr6 (1-51)||(26562704-26562754)
chr6 (1-50)||(15443710-15443759)
chr6 (1-72)||(7942270-7942342)
chr6 (1-37)||(11591878-11591914)
chr6 (1-37)||(19040367-19040403)
chr6 (1-37)||(34446580-34446616)
[»] chr1 (17 HSPs)
chr1 (1-76)||(1486678-1486753)
chr1 (2-54)||(20157341-20157393)
chr1 (1-51)||(44482245-44482295)
chr1 (1-45)||(1864880-1864924)
chr1 (1-49)||(6427365-6427413)
chr1 (4-51)||(21038101-21038148)
chr1 (1-48)||(34371728-34371775)
chr1 (2-49)||(36906013-36906060)
chr1 (1-43)||(23636051-23636093)
chr1 (1-51)||(25361901-25361951)
chr1 (1-43)||(28674815-28674857)
chr1 (1-42)||(42325575-42325616)
chr1 (1-37)||(7918219-7918255)
chr1 (1-37)||(10233268-10233304)
chr1 (7-43)||(13436479-13436515)
chr1 (1-37)||(17831539-17831575)
chr1 (1-37)||(25098563-25098599)
[»] chr7 (22 HSPs)
chr7 (1-51)||(17307908-17307958)
chr7 (1-76)||(5409805-5409880)
chr7 (1-54)||(5233644-5233697)
chr7 (1-50)||(22602705-22602754)
chr7 (6-75)||(32093990-32094059)
chr7 (1-46)||(36314626-36314671)
chr7 (1-37)||(4909166-4909202)
chr7 (6-74)||(13770711-13770779)
chr7 (1-72)||(1433469-1433540)
chr7 (4-51)||(8160434-8160481)
chr7 (1-76)||(9778515-9778590)
chr7 (1-48)||(23128658-23128705)
chr7 (1-51)||(3142072-3142122)
chr7 (1-43)||(5835262-5835304)
chr7 (1-51)||(15902837-15902887)
chr7 (1-39)||(23930234-23930272)
chr7 (1-54)||(5548691-5548744)
chr7 (23-72)||(21138969-21139018)
chr7 (4-37)||(27732247-27732280)
chr7 (1-49)||(27945056-27945104)
chr7 (14-54)||(33384573-33384613)
chr7 (1-37)||(38134414-38134450)
[»] chr5 (20 HSPs)
chr5 (4-50)||(15410443-15410489)
chr5 (1-54)||(38749554-38749607)
chr5 (1-65)||(43001815-43001879)
chr5 (1-56)||(6471878-6471933)
chr5 (1-76)||(39205895-39205970)
chr5 (1-70)||(23015964-23016033)
chr5 (3-43)||(2548404-2548444)
chr5 (1-44)||(19737483-19737526)
chr5 (1-76)||(30502362-30502432)
chr5 (1-76)||(30542705-30542775)
chr5 (1-48)||(36838558-36838605)
chr5 (1-43)||(28296343-28296385)
chr5 (1-50)||(40211971-40212020)
chr5 (1-54)||(43208265-43208318)
chr5 (1-49)||(3966518-3966566)
chr5 (1-37)||(12264837-12264873)
chr5 (1-49)||(17593718-17593766)
chr5 (1-37)||(26205768-26205804)
chr5 (1-37)||(31264453-31264489)
chr5 (1-37)||(41091265-41091301)
[»] chr3 (11 HSPs)
chr3 (1-76)||(8039798-8039879)
chr3 (1-76)||(29508459-29508535)
chr3 (1-51)||(16192744-16192794)
chr3 (1-43)||(20691334-20691376)
chr3 (6-76)||(40993309-40993374)
chr3 (1-73)||(5441005-5441075)
chr3 (1-54)||(25948878-25948931)
chr3 (2-36)||(4704301-4704335)
chr3 (6-76)||(27505266-27505336)
chr3 (4-48)||(29386508-29386552)
chr3 (1-37)||(52369790-52369826)
[»] chr4 (18 HSPs)
chr4 (1-54)||(18513232-18513285)
chr4 (1-40)||(46180941-46180980)
chr4 (1-53)||(15659752-15659804)
chr4 (1-76)||(36635339-36635415)
chr4 (1-51)||(7012081-7012131)
chr4 (1-43)||(18576039-18576081)
chr4 (1-39)||(20743284-20743322)
chr4 (1-76)||(37496719-37496800)
chr4 (1-43)||(40783972-40784014)
chr4 (6-43)||(15835640-15835677)
chr4 (2-51)||(46160912-46160961)
chr4 (2-54)||(7970535-7970587)
chr4 (45-73)||(21945557-21945585)
chr4 (1-37)||(24343522-24343558)
chr4 (1-37)||(31243556-31243592)
chr4 (1-37)||(40613465-40613501)
chr4 (1-33)||(43299983-43300015)
chr4 (1-33)||(43300631-43300663)
[»] chr8 (11 HSPs)
chr8 (4-48)||(11803277-11803321)
chr8 (1-42)||(3508067-3508108)
chr8 (1-45)||(7658478-7658522)
chr8 (1-76)||(12559074-12559150)
chr8 (1-51)||(4611549-4611599)
chr8 (4-50)||(14634136-14634182)
chr8 (6-47)||(22493514-22493555)
chr8 (6-46)||(7442865-7442905)
chr8 (1-33)||(13203656-13203688)
chr8 (2-50)||(33389356-33389404)
chr8 (1-37)||(34897100-34897136)
[»] chr2 (8 HSPs)
chr2 (1-43)||(18889593-18889635)
chr2 (7-76)||(41843462-41843531)
chr2 (1-36)||(15909641-15909676)
chr2 (5-54)||(44776618-44776667)
chr2 (1-45)||(8300219-8300263)
chr2 (1-37)||(10535767-10535803)
chr2 (1-37)||(18570987-18571023)
chr2 (1-37)||(21616777-21616813)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-54)||(18099-18152)
[»] scaffold0171 (1 HSPs)
scaffold0171 (6-62)||(23440-23496)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-51)||(44519-44569)
[»] scaffold0022 (1 HSPs)
scaffold0022 (4-49)||(99911-99956)
[»] scaffold0020 (1 HSPs)
scaffold0020 (4-49)||(137798-137843)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 25096552 - 25096668
Alignment:
Q  133 agttattcaatataacttttgatttgaaacatttttgaattaatttctattacatgatatgatactaatattctaaatcattcacagatgcttgagaatg 232  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||| ||||| |||||||||||||||||||||    
T  25096552 agttattcaatataacttttgatttgaaacatttttgaatttatttcaattacaagatatgctactaatattgtaaatgattcacagatgcttgagaatg 25096651  T
Q  233 ctggatttgatgatgtc 249  Q
    |||||||||||||||||    
T  25096652 ctggatttgatgatgtc 25096668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9024220 - 9024145
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||||||||| |||||||||| |||||||||||||||  |||| |||||||||| |  |||| ||| |||||||||    
T  9024220 ttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacacgggacatatccaacaccggga 9024145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12696339 - 12696414
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||| ||||||||||||||||||||||| | | ||||  |||| |||||||||| ||||| |||| ||||||||||    
T  12696339 ttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggacacgacacgtgtctgacaccggga 12696414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9025538 - 9025485
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||    
T  9025538 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccgaca 9025485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29049900 - 29049946
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  29049900 ttgagaaaattacataattcaatgtaatc--atgtgttggtgttgtgtc 29049946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 3398646 - 3398706
Alignment:
Q  14 ataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccgg 74  Q
    ||||||||||||||| ||| || | ||||| |||| ||||| |||||||||||||||||||    
T  3398646 ataattcagtgtaattataagtatcggtgtcgtgttggacacgacacatgtccgacaccgg 3398706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7569212 - 7569172
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggt 41  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  7569212 ttgagaaaattacataattcagtgtaattataggtgttggt 7569172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13364749 - 13364705
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttg 45  Q
    |||||||||| | |||||||||||||||||||||||| |||||||    
T  13364749 ttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttg 13364705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 20576675 - 20576628
Alignment:
Q  3 gagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    ||||||||| |||||||||||||||| ||| |||||||||| ||||||    
T  20576675 gagaaaattgcataattcagtgtaattataagtgttggtgtcgtgtcg 20576628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7265637 - 7265595
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||| ||||||||||||||||| |||||||| |||||    
T  7265637 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20518360 - 20518402
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||    
T  20518360 ttgagaaaattacataaatcagtataattatatgtgttggtgt 20518402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26562704 - 26562754
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| |||||||| | ||| |||||||    
T  26562704 ttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcgg 26562754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15443710 - 15443759
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    |||||||||| |||||||||| | |||| |||| ||||||||||||||||    
T  15443710 ttgagaaaataacataattcaatataattatatatgttggtgttgtgtcg 15443759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7942270 - 7942342
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca-tgacacatgtccgacacc 72  Q
    |||||| ||| |||||||||| |||||||| ||||||  ||| ||||||||||| |||||| |||| ||||||    
T  7942270 ttgagacaatgacataattcaatgtaatcacatgtgtcagtgctgtgtcggacactgacacgtgtcggacacc 7942342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11591914 - 11591878
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  11591914 ttgagaaaatcacataattcagtgtaattatatgtgt 11591878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19040367 - 19040403
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  19040367 ttgagaaaatcacataattcagtgtaattatatgtgt 19040403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34446580 - 34446616
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  34446580 ttgagaaaatgacataattcagtgtaatcataggtgt 34446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1486753 - 1486678
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||| ||||| ||||||||||||||||| ||| |||| ||||| |||||||||| ||||| |||||||||||||||    
T  1486753 ttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccggga 1486678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 20157393 - 20157341
Alignment:
Q  2 tgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    ||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||    
T  20157393 tgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtccgaca 20157341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44482245 - 44482295
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| |||||||| ||||| |||||||    
T  44482245 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcgg 44482295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1864924 - 1864880
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttg 45  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||    
T  1864924 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgttg 1864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6427365 - 6427413
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    |||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  6427365 ttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 21038101 - 21038148
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    ||||||||||||||||||||||||||||||| ||  |||| |||||||    
T  21038101 agaaaattacataattcagtgtaatcatatgcgtcagtgtcgtgtcgg 21038148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34371728 - 34371775
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgt 48  Q
    |||||||||| ||||||||||||||||| |||||||| ||||| ||||    
T  34371728 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 34371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 36906013 - 36906060
Alignment:
Q  2 tgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    ||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  36906013 tgagaaaatcacataattcagagtaattatatgtgttggcgttgtgtc 36906060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23636093 - 23636051
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  23636093 ttgagaaaattacataattcagtgtaattgtatgtgtcggtgt 23636051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25361901 - 25361951
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| ||||||||  |||| |||||||    
T  25361901 ttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcgg 25361951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28674815 - 28674857
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  28674815 ttgagaaaattacataattcagtataattatatatgttggtgt 28674857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42325575 - 42325616
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtg 42  Q
    |||||||||| ||||||||||||||||  |||||||||||||    
T  42325575 ttgagaaaatgacataattcagtgtaacaatatgtgttggtg 42325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7918255 - 7918219
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  7918255 ttgagaaaatcacataattcagtgtaattatatgtgt 7918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10233268 - 10233304
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  10233268 ttgagaaaatcacataattcagtgtaattatatgtgt 10233304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 13436479 - 13436515
Alignment:
Q  7 aaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgt 13436515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17831575 - 17831539
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| |||| |||||||||||||||||||||    
T  17831575 ttgagaaaatcacattattcagtgtaatcatatgtgt 17831539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25098599 - 25098563
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  25098599 ttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 17307908 - 17307958
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  17307908 ttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5409880 - 5409805
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||| ||||| ||||||||||||| ||| | | |||| ||||| |||||||||| ||||| |||||||||||||||    
T  5409880 ttgaaaaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccggga 5409805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5233644 - 5233697
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||||||| |||||||  |||||||| |||||||||||||||||||| ||||    
T  5233644 ttgagaaaatcacataatctagtgtaattatatgtgttggtgttgtgtccgaca 5233697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22602754 - 22602705
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    |||||||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  22602754 ttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcg 22602705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 32094059 - 32093990
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggg 75  Q
    ||||| ||||||||||||||||| | |  ||| ||||| |||||||||| ||||| ||||||||||||||    
T  32094059 aaaatcacataattcagtgtaattacaaatgtcggtgtcgtgtcggacacgacacgtgtccgacaccggg 32093990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36314671 - 36314626
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgt 46  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||    
T  36314671 ttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgt 36314626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4909166 - 4909202
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  4909166 ttgagaaaattacataattcattgtaatcatatgtgt 4909202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 13770711 - 13770779
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccgg 74  Q
    ||||||||||||||||||||||| | | |||| | ||| ||||||||||  |||| |||||||||||||    
T  13770711 aaaattacataattcagtgtaattacaagtgtcgttgtcgtgtcggacacaacacgtgtccgacaccgg 13770779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1433469 - 1433540
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacacc 72  Q
    |||||||||| |||| |||  ||||||| |||||||| ||||| |||||||||| ||||  |||||||||||    
T  1433469 ttgagaaaatcacatcatttggtgtaattatatgtgtcggtgtcgtgtcggacaagacatgtgtccgacacc 1433540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 8160434 - 8160481
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||||||||| |||||||| |||||||||||| | |||||||    
T  8160434 agaaaattacataatttagtgtaattatatgtgttggtatcgtgtcgg 8160481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9778515 - 9778590
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||| ||||| |||||||||||| |||| | | |||| ||||| ||||||||||  |||| |||||||||||||||    
T  9778515 ttgaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgtcggacacaacacgtgtccgacaccggga 9778590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23128705 - 23128658
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgt 48  Q
    |||||||||  | |||||||||||||||||||||||| ||||||||||    
T  23128705 ttgagaaaaccatataattcagtgtaatcatatgtgtcggtgttgtgt 23128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3142122 - 3142072
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    ||||| |||| | |||||||| ||||||||||||||| |||||||||||||    
T  3142122 ttgagtaaatcatataattcaatgtaatcatatgtgtcggtgttgtgtcgg 3142072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5835262 - 5835304
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||| ||||||||||||||||| |||||||| |||||    
T  5835262 ttgagaaaataacataattcagtgtaattatatgtgtcggtgt 5835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15902837 - 15902887
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||| ||||| |||||||| |||||||| |||||||| |||||||||||||    
T  15902837 ttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcgg 15902887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23930234 - 23930272
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttg 39  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  23930234 ttgagaaaatgacataattcagtgtaatcataggtgttg 23930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5548691 - 5548744
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||||||| | ||||||||||||||| ||||||||  |||| ||||||||||    
T  5548691 ttgagaaaatcaaataattcagtgtaattatatgtgtcagtgtcgtgtcggaca 5548744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 21139018 - 21138969
Alignment:
Q  23 tgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacacc 72  Q
    |||||| |||||||| ||||| ||||||||||||| || |||||||||||    
T  21139018 tgtaattatatgtgtcggtgtcgtgtcggacatgatacgtgtccgacacc 21138969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 27732280 - 27732247
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgt 37  Q
    ||||||||||||||||||||||||| ||||||||    
T  27732280 agaaaattacataattcagtgtaattatatgtgt 27732247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27945056 - 27945104
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    |||||||||||||||||||||||||||| | | |||| ||||| |||||    
T  27945056 ttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 33384613 - 33384573
Alignment:
Q  14 ataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||| |||||||| |||||||||||||| ||||||||||    
T  33384613 ataatttagtgtaattatatgtgttggtgtggtgtcggaca 33384573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38134450 - 38134414
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| |||||||||| |||||||||||||||    
T  38134450 ttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 15410489 - 15410443
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||    
T  15410489 agaaaattatatgattcagtgtaatcatatgtgttggtgttgtgtcg 15410443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38749607 - 38749554
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||| ||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  38749607 ttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggaca 38749554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43001815 - 43001879
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtc 65  Q
    |||| ||||||||||||||||||||||| | | ||||||||| ||||||||||| ||||| ||||    
T  43001815 ttgaaaaaattacataattcagtgtaattacaagtgttggtgatgtgtcggacacgacacgtgtc 43001879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6471933 - 6471878
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatg 56  Q
    |||||||||| ||||||||||||||||| |||||||| ||||| |||| |||||||    
T  6471933 ttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcgtgtgggacatg 6471878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39205895 - 39205970
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||||||||| | ||||||  ||||||| |||||||||||||| ||||| |||| ||||| || ||||||||||||    
T  39205895 ttgagaaaatcatataattaggtgtaattatatgtgttggtgtcgtgtccgacacgacacgtgcccgacaccggga 39205970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23016033 - 23015964
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgaca 70  Q
    |||||||||| ||||||||||||||||| ||| |||| | |||||| ||||||| ||||  |||||||||    
T  23016033 ttgagaaaatcacataattcagtgtaattataggtgtcgatgttgtatcggacacgacatgtgtccgaca 23015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 2548404 - 2548444
Alignment:
Q  3 gagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  2548404 gagaaaattacataattcagtgtaatcataagtgtcggtgt 2548444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19737526 - 19737483
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgtt 44  Q
    ||||||||||||||||||||| || |||||||||||| ||||||    
T  19737526 ttgagaaaattacataattcaatgcaatcatatgtgtcggtgtt 19737483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30502432 - 30502362
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||||||||| || |||||||||||||| |||||||| |     |||||||||| |||||||||||||||| ||||    
T  30502432 ttgagaaaatcacttaattcagtgtaattatatgtgtcg-----gtgtcggacacgacacatgtccgacactggga 30502362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30542775 - 30542705
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||||||||| || |||||||||||||| |||||||| |     |||||||||| |||||||||||||||| ||||    
T  30542775 ttgagaaaatcacttaattcagtgtaattatatgtgtcg-----gtgtcggacacgacacatgtccgacactggga 30542705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36838558 - 36838605
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgt 48  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| ||||    
T  36838558 ttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28296343 - 28296385
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||| |||||||||| |||| ||||||||||||||||    
T  28296343 ttgagaaaatgacataattcaatgtactcatatgtgttggtgt 28296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40211971 - 40212020
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    ||||||||||||||||||||| | ||||||||||| | ||||| ||||||    
T  40211971 ttgagaaaattacataattcaatataatcatatgtatcggtgtcgtgtcg 40212020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43208318 - 43208265
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||||||| |||||||||| ||||||||||| |||  |||||||||| ||||    
T  43208318 ttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtcagaca 43208265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3966518 - 3966566
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    |||||||||| ||| ||||||||||||| |||||||| ||||| |||||    
T  3966518 ttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtc 3966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12264873 - 12264837
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  12264873 ttgagaaaattacatgattcagtgtaattatatgtgt 12264837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17593766 - 17593718
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    |||||||||| || |||||||||||||| |||| |||||||| ||||||    
T  17593766 ttgagaaaatcacgtaattcagtgtaattatatatgttggtggtgtgtc 17593718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26205804 - 26205768
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  26205804 ttgagaaaatgacataattcagtgtaatcataggtgt 26205768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31264453 - 31264489
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  31264453 ttgagaaaatgacataattcagtgtaatcataagtgt 31264489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41091301 - 41091265
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  41091301 ttgagaaaatcacataattcagtgtaattatatgtgt 41091265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8039879 - 8039798
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt------tgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||||||||||| ||||||||||||||| |||||||| |||||       ||||||||||||| ||||||||||||||||||    
T  8039879 ttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccggga 8039798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29508459 - 29508535
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttg-tgtcggacatgacacatgtccgacaccggga 76  Q
    |||| ||||| | ||||||||||||||| |||||||| | ||||| ||||||||| |||||| ||||||||||||||    
T  29508459 ttgaaaaaatcatataattcagtgtaattatatgtgtcgatgttggtgtcggacacgacacacgtccgacaccggga 29508535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16192794 - 16192744
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| |||||||    
T  16192794 ttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcgg 16192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20691334 - 20691376
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  20691334 ttgagaaaatgacataattcagtgtaatcatatgtgtcggtgt 20691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 40993374 - 40993309
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    ||||| ||||||||||||||||| |||||||| |     |||||||||| |||||||||||||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcg-----gtgtcggacacgacacatgtccgacaccggga 40993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5441075 - 5441005
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccg 73  Q
    |||||||||| |||||||||| || |||  ||||||| ||||||||||| |||| ||||||||||| ||||||    
T  5441075 ttgagaaaatcacataattcaatggaat--tatgtgtcggtgttgtgtcagacacgacacatgtccaacaccg 5441005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25948931 - 25948878
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||| ||||| ||||||||||||||||| ||| |||||||||| ||||||||||    
T  25948931 ttgaaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtcggaca 25948878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 4704335 - 4704301
Alignment:
Q  2 tgagaaaattacataattcagtgtaatcatatgtg 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  4704335 tgagaaaatgacataattcagtgtaatcatatgtg 4704301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 27505266 - 27505336
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    ||||| |||||||| |||||||| | | |||| ||||| ||||| |||| ||||| |||||||||||||||    
T  27505266 aaaatcacataattaagtgtaattacaagtgtcggtgtcgtgtctgacacgacacgtgtccgacaccggga 27505336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 29386552 - 29386508
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgt 48  Q
    |||||| | ||||||||||||||||||||||||| ||||| ||||    
T  29386552 agaaaactgcataattcagtgtaatcatatgtgtcggtgtcgtgt 29386508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52369790 - 52369826
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  52369790 ttgagaaaattacataattcaatgtaatcataggtgt 52369826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18513285 - 18513232
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||||||| |||||||||| |||||||||||||||  |||||||||||||||    
T  18513285 ttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggaca 18513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46180980 - 46180941
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttgg 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46180980 ttgagaaaataacataattcagtgtaatcatatgtgttgg 46180941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15659804 - 15659752
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggac 53  Q
    ||||||||||  |||||||| ||||||| |||||||||||||| |||||||||    
T  15659804 ttgagaaaatctcataattcggtgtaattatatgtgttggtgtcgtgtcggac 15659752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36635339 - 36635415
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt-tgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||  ||||| |||| |||||  ||| ||||||||||    
T  36635339 ttgagaaaatcacataattcagtgtaattatatgtgttcgtgtgagtgtcagacacgacacgcgtcagacaccggga 36635415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7012081 - 7012131
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| |||||||||||||| |||||| || | |||||||||||||    
T  7012081 ttgagaaaatgacataattcagtgtgatcataggtatcggtgttgtgtcgg 7012131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18576081 - 18576039
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  18576081 ttgagaaaatcacataattcggtgtaattatatgtgttggtgt 18576039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 20743322 - 20743284
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttg 39  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  20743322 ttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37496719 - 37496800
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgt------cggacatgacacatgtccgacaccggga 76  Q
    |||||||||| |||||||||| |||||||| | |||| ||||||||||      |||||| |||||||||| ||||||||||    
T  37496719 ttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacaccggga 37496800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40783972 - 40784014
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||    
T  40783972 ttgagataataacataattcagcgtaatcatatgtgttggtgt 40784014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 15835677 - 15835640
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  15835677 aaaattatataattccgtgtaatcatatgtgttggtgt 15835640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 46160912 - 46160961
Alignment:
Q  2 tgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    ||||||||| |||||||||||||| || |||||||| ||||| |||||||    
T  46160912 tgagaaaataacataattcagtgttattatatgtgtcggtgtcgtgtcgg 46160961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 7970535 - 7970587
Alignment:
Q  2 tgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    ||||||||| | ||||||||||||||| |||||| ||||||| ||||| ||||    
T  7970535 tgagaaaatcatataattcagtgtaattatatgttttggtgtcgtgtcagaca 7970587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 21945557 - 21945585
Alignment:
Q  45 gtgtcggacatgacacatgtccgacaccg 73  Q
    |||||||||||||||||||||||||||||    
T  21945557 gtgtcggacatgacacatgtccgacaccg 21945585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24343522 - 24343558
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  24343522 ttgagaaaattacataattcagtgtaattataggtgt 24343558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31243592 - 31243556
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  31243592 ttgagaaaatgacataattcagtgtaatcataggtgt 31243556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40613465 - 40613501
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  40613465 ttgagaaaatcacataattcagtgtaattatatgtgt 40613501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43300015 - 43299983
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatat 33  Q
    ||||||||||||||||||||| |||||||||||    
T  43300015 ttgagaaaattacataattcaatgtaatcatat 43299983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43300631 - 43300663
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatat 33  Q
    ||||||||||||||||||||| |||||||||||    
T  43300631 ttgagaaaattacataattcaatgtaatcatat 43300663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 11803277 - 11803321
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgt 48  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||    
T  11803277 agaaaatcacataattcagtgtaattatatgtgttggtgttgtgt 11803321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3508067 - 3508108
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtg 42  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  3508067 ttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7658478 - 7658522
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttg 45  Q
    |||||||||||||||||||||||||||| |||| ||| |||||||    
T  7658478 ttgagaaaattacataattcagtgtaattatatttgtcggtgttg 7658522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12559150 - 12559074
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca-tgacacatgtccgacaccggga 76  Q
    |||||||||| | |||||||||||||||||||||| |||||||  | |||||||  ||||| ||||||||| |||||    
T  12559150 ttgagaaaatgatataattcagtgtaatcatatgtattggtgtcatctcggacaccgacacgtgtccgacaacggga 12559074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4611549 - 4611599
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| |||||| | |||| ||||||||    
T  4611549 ttgagaaaataacataattcagtgtaattatatgtctcggtgctgtgtcgg 4611599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 14634182 - 14634136
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    ||||||||| ||||||||||||||| |||| ||||||||| ||||||    
T  14634182 agaaaattatataattcagtgtaattatatttgttggtgtcgtgtcg 14634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 22493514 - 22493555
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgtg 47  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  22493514 aaaatcacataattcagtgtaatcatatatgtcggtgttgtg 22493555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 7442865 - 7442905
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgt 46  Q
    ||||||||||||||||||||||| | | |||||||||||||    
T  7442865 aaaattacataattcagtgtaattacaagtgttggtgttgt 7442905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13203656 - 13203688
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatat 33  Q
    |||||||||||||||||||||||||||| ||||    
T  13203656 ttgagaaaattacataattcagtgtaattatat 13203688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 33389404 - 33389356
Alignment:
Q  2 tgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcg 50  Q
    ||||||||  |||||||| ||| ||||||||||||||||||| ||||||    
T  33389404 tgagaaaagaacataattaagtataatcatatgtgttggtgtcgtgtcg 33389356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34897100 - 34897136
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34897100 ttgagaaaatcacataattcagtgtaattatatgtgt 34897136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18889635 - 18889593
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgt 43  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  18889635 ttgagaaaatcacataattcagtgtaatcatatgtgtcggtgt 18889593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 41843462 - 41843531
Alignment:
Q  7 aaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacatgtccgacaccggga 76  Q
    |||| ||||||||| || |||| |||||||| |||||||||||||||  ||||| |||||||||| ||||    
T  41843462 aaatcacataattcggtataattatatgtgtcggtgttgtgtcggacgcgacacgtgtccgacacgggga 41843531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15909676 - 15909641
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtg 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  15909676 ttgagaaaattacataattcagtgtaattatatgtg 15909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 44776618 - 44776667
Alignment:
Q  5 gaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||| |||||| ||||||||||||||| ||| ||||| ||||||||||    
T  44776618 gaaaatgacataactcagtgtaatcatatatgtcggtgtcgtgtcggaca 44776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8300263 - 8300219
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttg 45  Q
    |||||||||| |||||||| |||||||||||| |||| |||||||    
T  8300263 ttgagaaaatgacataatttagtgtaatcataagtgtcggtgttg 8300219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10535803 - 10535767
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  10535803 ttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18570987 - 18571023
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| |||||||||| |||||||||||||||    
T  18570987 ttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21616777 - 21616813
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgt 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  21616777 ttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18152 - 18099
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggaca 54  Q
    |||||||||| |||||||||| |||||||  | |||||||||||||||||||||    
T  18152 ttgagaaaataacataattcaatgtaatcgcaagtgttggtgttgtgtcggaca 18099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 23440 - 23496
Alignment:
Q  6 aaaattacataattcagtgtaatcatatgtgttggtgttgtgtcggacatgacacat 62  Q
    ||||| ||||||||||||||||| ||| |||| ||||| |||||||||| |||||||    
T  23440 aaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacat 23496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44569 - 44519
Alignment:
Q  1 ttgagaaaattacataattcagtgtaatcatatgtgttggtgttgtgtcgg 51  Q
    |||||||||| ||||||||||||||||| |||||||| ||| | |||||||    
T  44569 ttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcgg 44519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 99911 - 99956
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    ||||||| |||||||||| |||||| |||||||||||||| |||||    
T  99911 agaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 137798 - 137843
Alignment:
Q  4 agaaaattacataattcagtgtaatcatatgtgttggtgttgtgtc 49  Q
    ||||||| ||| ||||||||||| |||||||||||||||| |||||    
T  137798 agaaaatcacacaattcagtgtagtcatatgtgttggtgtcgtgtc 137843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University