View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_38 (Length: 256)
Name: NF6560_low_38
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29016428 - 29016189
Alignment:
| Q |
1 |
tcatcatgatcacatcttgcaaattcaggtacagtttcagcaatagcaacaaacttatccagaggcaaattcacatccttagcaacctcttgaagatact |
100 |
Q |
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| T |
29016428 |
tcatcatgatcacatcttgcaaattcaggtacagtttcagcaatagcaacaaacttatccagaggcaaattcacatccttagcaacctcttgaagatact |
29016329 |
T |
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| Q |
101 |
tatcaacaagcttagccacctttaactttgagctatgtgaaactgatgaagatcttctactctcttgcaattcaaaatcaacattctcagccgaacgtga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29016328 |
tatcaacaagcttagccaccttcaactttgagctatgtgaaactgaagaagatcttctactctcttgcaattcaaaatcaacattctcagccgaacgtga |
29016229 |
T |
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| Q |
201 |
cctcctccgttcaaaagcgaaccttgatctttgaggacta |
240 |
Q |
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| T |
29016228 |
ccttctccgttcaaaagcgaaccttgatctttgaggacta |
29016189 |
T |
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Back To:
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14130043 - 14129847
Alignment:
| Q |
1 |
tcatcatgatcacatcttgcaaattcaggtacagtttcagcaatagcaacaaacttatccagaggcaaattcacatccttagcaacctcttgaagatact |
100 |
Q |
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|||||||||||| ||||||||||||| |||| | | ||||||| ||||| || || || | ||||||||||| | ||||| || ||||| ||| |
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| T |
14130043 |
tcatcatgatcatatcttgcaaattctggtataatatcagcaagagcaatgaattttgacaatgaaaaattcacatctcttgcaacttcctgaaggtacc |
14129944 |
T |
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| Q |
101 |
tatcaacaagcttagccacctttaactttgagctatgtgaaactgatgaagatcttctactctcttgcaattcaaaatcaacattctcagccgaacg |
197 |
Q |
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| T |
14129943 |
tatccacaagttttgccactttcaattttgaactatgtgatgctgaagaggacctcctactctcttgtaattcaaagttaatattctcagccgaacg |
14129847 |
T |
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