View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_39 (Length: 255)
Name: NF6560_low_39
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43395745 - 43395994
Alignment:
| Q |
1 |
aggaatcagtgatgagatactatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcctgca |
100 |
Q |
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| T |
43395745 |
aggaatcagtgatgagatactatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcctgca |
43395844 |
T |
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| Q |
101 |
actgcagtacacaaatggttttccaacatcctcaaaccc------------aacaataacaataacaatagccccagtaacacgccaccaccttctccag |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43395845 |
actgcagtacacaaatggttttccaacatcctcaaacccaacaataacaataacaataacaataacaatagcccaagtaacacgccaccaccttctccag |
43395944 |
T |
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| Q |
189 |
attctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395945 |
attctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatct |
43395994 |
T |
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