View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_40 (Length: 251)
Name: NF6560_low_40
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 29301908 - 29302003
Alignment:
| Q |
8 |
cgaagaaaattctatgaccaaagcatttgaatccaaaacactatatattatatttcacactcatgacccacattaattataattattttgtggact |
103 |
Q |
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| T |
29301908 |
cgaacaaaattctatgaccaaagcatttgaatccaaaacactatatattatatttcacactcatgacccacattaattataattattttgtggact |
29302003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 29302404 - 29302524
Alignment:
| Q |
133 |
taaaagtagataaagtcttagatagacacaacctcaaatcaaaatgatttgggcacattaac--nnnnnnnnctaggaataaaataaaataatattaatt |
230 |
Q |
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| T |
29302404 |
taaaagtagataaagtcttagatagacacaatctcaaatcaaaatgatttgggcacattaacaaaaaaaaaaataggaataaaattaaatgatattaatt |
29302503 |
T |
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| Q |
231 |
aatgtcactgattcctcttaa |
251 |
Q |
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| T |
29302504 |
gatgtcactgattcctcttaa |
29302524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 29308612 - 29308703
Alignment:
| Q |
8 |
cgaagaaaattctatgaccaaagcatttgaatccaaaacactatatattatatttcacactcatgacccacattaattataattattttgtggact |
103 |
Q |
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| T |
29308612 |
cgaacaaaattctatgaccaaatcatttgaatcctaaacattatatattctatttcatactcatgacccac----attataattattttgtggact |
29308703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 43617381 - 43617349
Alignment:
| Q |
157 |
gacacaacctcaaatcaaaatgatttgggcaca |
189 |
Q |
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| T |
43617381 |
gacacaacctcaaattaaaatgatttgggcaca |
43617349 |
T |
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