View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_43 (Length: 250)
Name: NF6560_low_43
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 38867136 - 38867357
Alignment:
| Q |
18 |
gtgtgaagggtccattttcgaagaacgaaaacaaaactgttgttgaataaggtgcatatagtgaatatgagaagttcctgcttcaatgaatgaaacagac |
117 |
Q |
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| T |
38867136 |
gtgtgaagggtccattttcgaagaacgaaaacaaaactgtcgttgaataaggtgcatatagtgaatatgtgaagttcctgcttcaatgaatgaaacagac |
38867235 |
T |
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| Q |
118 |
caaaacattatcaaatcggtacttttagtaacactcattcaatctcttttcatttgacaattgaataatatgtcaaatgacaattggcaaaaaagaatgc |
217 |
Q |
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| T |
38867236 |
caaaacattatcaaatcggtacttttagtaacactaattcaatctcttttcatttgacaattgaataatatgtcaaatgacaattggcaaaaaagaatgc |
38867335 |
T |
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| Q |
218 |
attattgagtcactcagttcat |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
38867336 |
attattgagtcactcagttcat |
38867357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 38805900 - 38805692
Alignment:
| Q |
31 |
attttcgaagaacgaaaacaaaactgttgttgaataaggtgcatatagtgaatatgagaagttcctgcttcaatgaatgaaacagaccaaaacattatca |
130 |
Q |
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||||| ||||||||||||||||||||| || ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
38805900 |
atttttgaagaacgaaaacaaaactgtcgtcgaataaggtgcatgtagtgagtatgtgaagttcctgcttcaatgaatgaaacagaccaaagcataatca |
38805801 |
T |
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| Q |
131 |
aatcggtacttttagtaacactcattcaatctcttttcatttgacaattgaat-aatatgtcaaatgacaattggcaaaaaagaatgcattattgagtca |
229 |
Q |
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||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38805800 |
aatgggtacttttagtaacactccttcaatcccttttcatttgacaattgaataaatatgtcaaatgacaattggcaaaaaagaatgcactattgagtca |
38805701 |
T |
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| Q |
230 |
ctcagttca |
238 |
Q |
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| T |
38805700 |
ctcagttca |
38805692 |
T |
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