View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_44 (Length: 248)
Name: NF6560_low_44
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 1030177 - 1030383
Alignment:
| Q |
1 |
gaaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatgga-agaccaaaactgacaacttttaaacataaagagatta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| | |
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| T |
1030177 |
gaaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatggatagaccaaaactaacaa-ttttaaacataaagagatca |
1030275 |
T |
|
| Q |
100 |
agtccgcaaaatgnnnnnnncagggtatcgaaactacaattaaacacttaaaattccat--nnnnnnnngtacttttgttaattcacaaaaatattgttc |
197 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1030276 |
agtccgcaaaatgaaaaaaaca-ggtatcgaaactacaattaaacacttaaaattccataaaaaaaaaagtacttttgttaattcacaaaaatattgttc |
1030374 |
T |
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| Q |
198 |
cattttaac |
206 |
Q |
| |
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||||||||| |
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| T |
1030375 |
cattttaac |
1030383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 1031010 - 1031051
Alignment:
| Q |
199 |
attttaaccaccatttacaattttgataatatattttcctat |
240 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1031010 |
attttaaccaccgtttacaattttgataatatattttcctat |
1031051 |
T |
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