View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_45 (Length: 243)
Name: NF6560_low_45
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7162277 - 7162052
Alignment:
| Q |
1 |
aatgttgatttagctatacaatggaattatgttggaagattgtgttcttcgatatttaatttttcatcaaacatagtcaccttcaatggatgtttatgaa |
100 |
Q |
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| T |
7162277 |
aatgttgatttagctatacaatggagttatgttggaagattgtgttcttcgatatttaatttttcttcaaacatagtcaccttcaatggatgtttatgaa |
7162178 |
T |
|
| Q |
101 |
aatggtgaagagttagagatgnnnnnnnggttttgaaaatgtatatgaacaatagaattttttgaccaagatttttgttcgtctactctaaggaactatt |
200 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7162177 |
aatggtgatgagttagagatgaaaaaaaggttttgaaaatgtatatgaacaatagaattttttgaccaagatttttgttcgtctactctaaggaaccatt |
7162078 |
T |
|
| Q |
201 |
gagatacactagcttcatctactatt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7162077 |
gagatacactagcttcatctactatt |
7162052 |
T |
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