View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_48 (Length: 227)

Name: NF6560_low_48
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_48
NF6560_low_48
[»] chr8 (8 HSPs)
chr8 (1-218)||(5887102-5887319)
chr8 (4-218)||(5842966-5843180)
chr8 (4-218)||(5849708-5849922)
chr8 (64-218)||(5984557-5984711)
chr8 (64-218)||(5949029-5949183)
chr8 (68-216)||(5960298-5960446)
chr8 (79-218)||(5921152-5921291)
chr8 (141-214)||(39916637-39916710)
[»] chr2 (2 HSPs)
chr2 (87-218)||(42788930-42789061)
chr2 (184-214)||(27172818-27172848)
[»] chr7 (2 HSPs)
chr7 (159-218)||(45676080-45676139)
chr7 (168-214)||(48892630-48892676)
[»] chr3 (2 HSPs)
chr3 (164-214)||(44674039-44674089)
chr3 (159-214)||(34626700-34626755)
[»] chr5 (1 HSPs)
chr5 (164-214)||(1281333-1281383)
[»] chr1 (2 HSPs)
chr1 (164-214)||(16127411-16127461)
chr1 (158-211)||(37962871-37962924)
[»] chr4 (1 HSPs)
chr4 (162-214)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5887102 - 5887319
Alignment:
Q  1 caaccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887102 caaccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcc 5887201  T
Q  101 tagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887202 tagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaa 5887301  T
Q  201 ctctttccacatctctgc 218  Q
    |||||||| |||||||||    
T  5887302 ctctttccgcatctctgc 5887319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 5842966 - 5843180
Alignment:
Q  4 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 103  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5842966 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctag 5843065  T
Q  104 aatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 203  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  5843066 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgttttaaatcaggtcttagataatttatccatcttaatctacaactt 5843165  T
Q  204 tttccacatctctgc 218  Q
    |||||||||||||||    
T  5843166 tttccacatctctgc 5843180  T

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Target: chr8; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 5849708 - 5849922
Alignment:
Q  4 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 103  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  5849708 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagcaattgtaatggatatacctattgcctag 5849807  T
Q  104 aatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 203  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  5849808 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactt 5849907  T
Q  204 tttccacatctctgc 218  Q
    |||||||||||||||    
T  5849908 tttccacatctctgc 5849922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 5984557 - 5984711
Alignment:
Q  64 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 163  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984557 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5984656  T
Q  164 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984657 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 5984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 5949029 - 5949183
Alignment:
Q  64 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 163  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5949029 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5949128  T
Q  164 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 218  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5949129 atcaggtcttagataatttatccatcttaatcttcaactctttccacatctctgc 5949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 5960298 - 5960446
Alignment:
Q  68 aaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatca 167  Q
    |||||||||| ||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5960298 aaaagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatca 5960397  T
Q  168 ggtcttagataatttatccatcttaatctgcaactctttccacatctct 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5960398 ggtcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 5921152 - 5921291
Alignment:
Q  79 tgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 178  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  179 atttatccatcttaatctgcaactctttccacatctctgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgc 5921291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 39916710 - 39916637
Alignment:
Q  141 tgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    |||| |||| ||||||| || | ||||||||| |||||||| |||||||| |||||||| || |||||||||||    
T  39916710 tgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 42788930 - 42789061
Alignment:
Q  87 atatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 186  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  42788930 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatcc 42789029  T
Q  187 atcttaatctgcaactctttccacatctctgc 218  Q
    |||| || |||||||| |||||||||||||||    
T  42789030 atctcaacctgcaactttttccacatctctgc 42789061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 27172818 - 27172848
Alignment:
Q  184 tccatcttaatctgcaactctttccacatct 214  Q
    |||||||||||||||||||||||||||||||    
T  27172818 tccatcttaatctgcaactctttccacatct 27172848  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 45676080 - 45676139
Alignment:
Q  159 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 218  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgc 45676139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 48892630 - 48892676
Alignment:
Q  168 ggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  48892630 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  164 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 34626700 - 34626755
Alignment:
Q  159 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    |||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatct 34626755  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  164 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    |||||| |||| ||||||| |||||||||| || |||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  164 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 37962924 - 37962871
Alignment:
Q  158 tttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccaca 211  Q
    |||||||||||| || |  ||||||||||||||||| ||||||||||| |||||    
T  37962924 tttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccaca 37962871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  162 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 214  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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