View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6560_low_49 (Length: 226)
Name: NF6560_low_49
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 1738829 - 1738638
Alignment:
| Q |
15 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1738829 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgcc |
1738730 |
T |
|
| Q |
115 |
aatgttagttggtctatatatttcatgaaacactcattcattgatatatatnnnnnnnnnnnntacttatgcataataattaaactacagtaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1738729 |
aatgttagttggtctatatatttcatgaaacactcattcattgatatatat--acacacacactacttatgcataataattaaactacagtaat |
1738638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 1717332 - 1717232
Alignment:
| Q |
15 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggc |
114 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
1717332 |
aaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--taccaaatccttgcc |
1717235 |
T |
|
| Q |
115 |
aat |
117 |
Q |
| |
|
||| |
|
|
| T |
1717234 |
aat |
1717232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 1748684 - 1748591
Alignment:
| Q |
15 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatcct |
110 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||| |||| | ||||| |||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
1748684 |
aaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaa--aaccaaatcct |
1748591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University