View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_5 (Length: 525)
Name: NF6560_low_5
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 35766965 - 35766459
Alignment:
| Q |
1 |
caatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaattctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766965 |
caatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaattctc |
35766866 |
T |
|
| Q |
101 |
taatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggctaaccaatttagacaaccattcagatacgcaccatcattcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35766865 |
taatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggccaaccaatttagacaaccattcagatacacaccatcattcac |
35766766 |
T |
|
| Q |
201 |
accatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766765 |
accatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatct |
35766666 |
T |
|
| Q |
301 |
tcagcttcattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatatacatacagacataa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35766665 |
tcagcttcattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatatacatacagacataa |
35766566 |
T |
|
| Q |
401 |
ataatcccaaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaagtggtaagaataacca |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35766565 |
ataatcccaaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaagtggtaagaataacca |
35766466 |
T |
|
| Q |
501 |
agcaaac |
507 |
Q |
| |
|
||||||| |
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|
| T |
35766465 |
agcaaac |
35766459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 19358848 - 19358741
Alignment:
| Q |
233 |
caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagcttcattaaaaaataactgcactacctt |
332 |
Q |
| |
|
|||||||| ||||||| || |||||||||||| || |||| |||||||| || || |||||| | ||||||||||| |||| |||| ||| ||||| |
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| T |
19358848 |
caggaaaaatttgaataggtttccaaacattatcacgcaaatttaaaactcgcgcacgagttctgttttcagcttcatccaaaagtaacatcacaacctt |
19358749 |
T |
|
| Q |
333 |
ataagtct |
340 |
Q |
| |
|
|||||||| |
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|
| T |
19358748 |
ataagtct |
19358741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 36260198 - 36260088
Alignment:
| Q |
3 |
atggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaattctcta |
102 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||| | |||||||||||||| |||||| ||||| |||| |||| ||||| |||||||||||||||| | || |
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|
| T |
36260198 |
atggctcaataggtgacatttcatcaaaaccgcaaggaggcatcaactttgtgtatgtctc--tgtttccagatcaagtgaaacaatcacaaatttttta |
36260101 |
T |
|
| Q |
103 |
atatccattttct |
115 |
Q |
| |
|
| || |||||||| |
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|
| T |
36260100 |
acattcattttct |
36260088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 341
Target Start/End: Complemental strand, 36255168 - 36254976
Alignment:
| Q |
151 |
cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacaccatggtttgtatta--aaaggaacaagagccacaggaaaactttgaat |
248 |
Q |
| |
|
||||| || |||||||| | || |||||||| |||| ||||||||||||||||| | | |||| | ||||||| |||| | |||||||| ||||||| |
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|
| T |
36255168 |
cgaagtgccaaccaattaaaactaccattcaaatacacaccatcattcacaccaggactagtatcacaaaaggaagaagaacagcaggaaaattttgaat |
36255069 |
T |
|
| Q |
249 |
gcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagcttcattaaaaaataactgcactaccttataagtctc |
341 |
Q |
| |
|
|| ||||||||||||||| || || |||| |||||| |||||||||| || | | |||| |||| |||| ||| |||||||||||||| |
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|
| T |
36255068 |
aggtttccaaacattattacacacacataaagtttgcacgtcagttctatttttaacatcatccaaaattaacatcacaaccttataagtctc |
36254976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 46769088 - 46769018
Alignment:
| Q |
233 |
caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttca |
303 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||| ||| ||||||||||||| |||||||| |||| |
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|
| T |
46769088 |
caggaaaactttgaatagttctccaaatattatcacccacactcaaaacttgcacatgagttctattttca |
46769018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 36255293 - 36255221
Alignment:
| Q |
21 |
tttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaa |
95 |
Q |
| |
|
||||||||||||| | |||||||||| ||| ||||| |||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
36255293 |
tttcatcaaaaccacgcggaggcatcagctgcgtgtatgtctct--gttcccagatcaagcgcaacaatcacaaa |
36255221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 18953261 - 18953299
Alignment:
| Q |
227 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
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|
| T |
18953261 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18953299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 18983308 - 18983346
Alignment:
| Q |
227 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18983308 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18983346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 18997954 - 18997992
Alignment:
| Q |
227 |
gagccacaggaaaactttgaatgcgtctccaaacattat |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18997954 |
gagccacaggaaaactttgaatatgtctccaaacattat |
18997992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 20495586 - 20495533
Alignment:
| Q |
151 |
cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacacca |
204 |
Q |
| |
|
||||| || |||||||| |||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
20495586 |
cgaagagccaaccaattcagactaccattcaaatacacaccatcattcacacca |
20495533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 30398820 - 30398771
Alignment:
| Q |
254 |
tccaaacattattacccaaacttaaaacttgcacatcagttctatcttca |
303 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||| |||||||| |||| |
|
|
| T |
30398820 |
tccaaacattattagccacacttaaaactcgcacatgagttctattttca |
30398771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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