View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6560_low_6 (Length: 520)

Name: NF6560_low_6
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6560_low_6
NF6560_low_6
[»] chr4 (1 HSPs)
chr4 (20-498)||(54423622-54424109)
[»] chr1 (6 HSPs)
chr1 (21-328)||(20120748-20121056)
chr1 (322-475)||(20127319-20127472)
chr1 (311-481)||(27645594-27645764)
chr1 (380-456)||(12461045-12461121)
chr1 (329-393)||(13190645-13190709)
chr1 (281-481)||(44137419-44137619)
[»] chr8 (2 HSPs)
chr8 (317-456)||(9182994-9183133)
chr8 (317-456)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (317-456)||(10161217-10161356)
chr6 (380-456)||(16860983-16861059)
chr6 (323-437)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (380-456)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (317-444)||(238965-239092)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Complemental strand, 54424109 - 54423622
Alignment:
Q  20 taacatgcatcccgataaatcacctgggccagacagccttaacccggctttctacc-cagattttgggaagatatcggggatgaaatattctcttctgcc 118  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||  |||||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  54424109 taacatgcattcggataaatcacctgggccagacggccttaacccgattttctaccacagattttggaaagatatcggtgatgaaatattctcttctgcc 54424010  T
Q  119 tagtcttggttagctt--------cgagttatctacccc-agatttaaatgctacaaacatagtgcttgcaccaaagggtgataatccg-aatccatgcg 208  Q
    | ||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  54424009 tcgtcttggttagctttgagacttcgagttatctacccccagatttaaatgctacaaacatagtgcttgcaccaaagggtgataatctggaatccatgcg 54423910  T
Q  209 ggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  54423909 ggaccttcgacctatttctctctgcaatgtgttatacaagatcg--tttctaaggtcctggtcaatcgtcttcgtccacttattaacaaatggatttccc 54423812  T
Q  309 aagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54423811 aagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaagaaaaaat 54423712  T
Q  409 aggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggtt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423711 aggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggtt 54423622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 20120748 - 20121056
Alignment:
Q  21 aacatgcatcccgataaatcacctgggccagacagccttaacccggctttctacc-cagattttgggaagatatcggggatgaaatattctcttctgcct 119  Q
    ||||||||||| |||||||| || || |||||| |||||||||||||||||||||  || |||||||| || || ||||| ||||| ||||||| |||||    
T  20120748 aacatgcatccggataaatccccgggcccagacggccttaacccggctttctaccataggttttgggaggacattggggacgaaattttctcttttgcct 20120847  T
Q  120 agtcttggttagcttcgagttatct-accccagatttaaatgctacaaacatagtgcttgcaccaaagggtgataatcc-gaatccatgcgggaccttcg 217  Q
     ||||||||| ||||| | || |||  ||||||| ||||||| |||||||||||| || || |||||||| || ||||| ||||||||||| ||||||||    
T  20120848 tgtcttggttggcttcaacttctctgcccccagaattaaatgttacaaacatagttctcgctccaaagggagacaatccggaatccatgcgagaccttcg 20120947  T
Q  218 acctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacagg 317  Q
     |||||||||||||| |||||  | ||||||||   || ||||||||||| | ||||||||| | |||| | || |||||||| |||| ||||||||| |    
T  20120948 gcctatttctctctgtaatgtactgtacaagat--tgtctctaaggtccttgccaatcgtctccatccattaatcaacaaatggatttcccaagaacaag 20121045  T
Q  318 cagcctttgtg 328  Q
    |||||||||||    
T  20121046 cagcctttgtg 20121056  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 322 - 475
Target Start/End: Original strand, 20127319 - 20127472
Alignment:
Q  322 ctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct 421  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||     
T  20127319 ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca 20127418  T
Q  422 ctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaa 475  Q
    || |||||||| |||||||||||||| |||||||||| |||| | |||||||||    
T  20127419 ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaa 20127472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 481
Target Start/End: Complemental strand, 27645764 - 27645594
Alignment:
Q  311 gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag 410  Q
    ||||||||||| || || || || ||||| ||||||||||||||  |||| || || ||| |  | |||||||||||||||||||| ||||| ||||| |    
T  27645764 gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg 27645665  T
Q  411 gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctatt 481  Q
    ||||||||||||| |||||||| || || ||||| || |||||||| |  |||| |||||| |||||||||    
T  27645664 gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctatt 27645594  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
Q  380 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 456  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  12461121 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 12461045  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 13190709 - 13190645
Alignment:
Q  329 cattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaa 393  Q
    |||||||| || ||||||||||||||  |||||||||| ||| ||||||| |||||||| |||||    
T  13190709 cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa 13190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 481
Target Start/End: Original strand, 44137419 - 44137619
Alignment:
Q  281 cgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatc 380  Q
    ||||| || ||||||||||| || |  | ||||||| | |||||||| || ||||| || ||||||||||| ||  ||||| |||| ||   ||| || |    
T  44137419 cgtcctctcattaacaaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacaacatttgagactctccacc 44137518  T
Q  381 atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctat 480  Q
    ||||||| |||||||  ||||||||||| ||||| || ||| | ||  | ||||| || ||||| || || ||||||| |||||| |||||  |||||||    
T  44137519 atatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaagttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctat 44137618  T
Q  481 t 481  Q
    |    
T  44137619 t 44137619  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 456
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
Q  317 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 416  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  9183133 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 9183034  T
Q  417 tggctctcaaacttgacatatccaaggcattcgatagtgt 456  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  9183033 tagctctaaaacttgacatttcgaaggcttttgatagtgt 9182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 456
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
Q  317 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 416  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| | || ||| ||||||||||||| |  |||||||||| |||||| |    
T  11625140 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg 11625239  T
Q  417 tggctctcaaacttgacatatccaaggcattcgatagtgt 456  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  11625240 tagctctaaaacttgacatttcgaaggcttttgatagtgt 11625279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 317 - 456
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
Q  317 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 416  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  10161356 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 10161257  T
Q  417 tggctctcaaacttgacatatccaaggcattcgatagtgt 456  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  10161256 tagctctaaaacttgacatttcgaaggcttttgatagtgt 10161217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
Q  380 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 456  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || |||||    
T  16860983 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt 16861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 437
Target Start/End: Complemental strand, 21741103 - 21740989
Alignment:
Q  323 tttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctc 422  Q
    ||||| ||||||| ||| || ||||| ||||| || |  |||| |||| |||||||||||||||| || ||| | ||||| || | |||||||||||||     
T  21741103 tttgtccattctctctccattatggacaatgctctgatggcatacgaaattcttcatcatatgcgttgtaaatcgaaagggaagaaaggtgaggtggctt 21741004  T
Q  423 tcaaacttgacatat 437  Q
    | |||||||| ||||    
T  21741003 tgaaacttgatatat 21740989  T

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Target: scaffold0703 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
Q  380 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 456  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  2013 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 444
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
Q  317 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 416  Q
    ||||||||||| |  ||| | || |||||||||||||| ||| |||| || ||| |||||||   |||||| ||||| | |||||| ||||| || ||||    
T  239092 gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg 238993  T
Q  417 tggctctcaaacttgacatatccaaggc 444  Q
    ||||| | || ||||| |||||||||||    
T  238992 tggctttaaagcttgatatatccaaggc 238965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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