View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_7 (Length: 491)
Name: NF6560_low_7
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 26003009 - 26002543
Alignment:
| Q |
11 |
aatatccccacaatcataatcttcttgtatgcctccatctctttgctcaaactttcactcttaatcagtgtttgtcataataaagtgacagttatatata |
110 |
Q |
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| T |
26003009 |
aatatccccacaatcataatcttcttgtatgcctccatctctttgctcaaactttcactcttaatcagtgtttgtcataa---agtgacagttatatata |
26002913 |
T |
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| Q |
111 |
taggataggatgtgaaactgaacattgttgcaatagtcaataaaatttttatttagaggtgtgcggtggctaatttgcaatactataggttatatatgct |
210 |
Q |
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| T |
26002912 |
taggataggatgtgaaactgaacattgttgcaatagtcaataag-tttttat---gaagtgtgcggtggctaatttgcaatactataggttatatatgct |
26002817 |
T |
|
| Q |
211 |
ctctaattaagtgaatgaacgtcttcactgttagatttccgtgtggggaaaacttcattatgtctaatggattggaaaagccatgaaacatactataata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
26002816 |
ctctaattaagtgaatgaacgtcttcactgttagattcccgtgtggggaaaatttcataatgtctaatgaataggaaaagccatgaaacatactataata |
26002717 |
T |
|
| Q |
311 |
cgaacaataatattattgaaa---actaggaagtgtaatatatgtgatgtttcaaaggtgcattcatcggagaatataatatactagaaaaaagttggaa |
407 |
Q |
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| T |
26002716 |
cgaacaataatattattgaaaaacactaggaagtgtaatatatgtgatgtttcaaaggtgcattgatcggagaatctaatatactag-aaaaagttggaa |
26002618 |
T |
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| Q |
408 |
c-----nnnnnnnntatacactagtattacttatatttaattgatagctactattacattgtaaccttatatatg |
477 |
Q |
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| T |
26002617 |
caaattaaaaaatatatacactagtattacttataattaattgatagctactattacattgtaaccttatatatg |
26002543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 26015644 - 26015601
Alignment:
| Q |
115 |
ataggatgtgaaactgaacattgttgcaatagtcaataaaattt |
158 |
Q |
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| T |
26015644 |
ataggatgtaaaattgaacattgtcgcaatagtcaataaaattt |
26015601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 26018869 - 26018828
Alignment:
| Q |
11 |
aatatccccacaatcataatcttcttgtatgcctccatctct |
52 |
Q |
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||||| ||||||||||||| ||| |||||||||||||||||| |
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| T |
26018869 |
aatatgcccacaatcataaccttgttgtatgcctccatctct |
26018828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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