View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6560_low_9 (Length: 458)
Name: NF6560_low_9
Description: NF6560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6560_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 19477901 - 19477474
Alignment:
| Q |
22 |
ttccattaaatatcaacgagaaatggacgctttagtaaaataatttcacatgaaatctaaaaaatgaatttcactataaactaacttttataatcatttt |
121 |
Q |
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| T |
19477901 |
ttccattaaatatcaacgaggaatggacgctttagtaaa-taatttcacatgaaatctaaaaaatgaatttcactataaactaacttttataatcatttt |
19477803 |
T |
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| Q |
122 |
tcatcacaatttgacatatgttatcttaaatgacaaaaattaaacatattttaataggttagttcaaacactaattttactaaacattataatttttata |
221 |
Q |
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| T |
19477802 |
tcatcacaatttgacatatgttatcttaaatgacaaaaattaaacatattttaataggttagttcaaactctaattttactaaacattataatttttata |
19477703 |
T |
|
| Q |
222 |
tactagcttataaattatcatgttatcctccttaaactctttcctaataaactaatttatcaattattcactcttttttaccaaacaaaacttaaatcgt |
321 |
Q |
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| T |
19477702 |
tactagcttataaattatcatgttatccaccttaaactctttcgcaataaactaatttatcaattattcactcttttttaccaaacaaaacttaaattgt |
19477603 |
T |
|
| Q |
322 |
tttcaacagcccatattactgctggattatggcgttgtagagaatcaattttggatctggattttctgctgctgtaacagttcaggaccttccgatctaa |
421 |
Q |
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||||||||||| | ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19477602 |
tttcaacagcctagattactgctagattatggtgttgtagagaaccaattttggatttggattttctgctcttgtaacagttcaggaccgtccgatctaa |
19477503 |
T |
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| Q |
422 |
atcatgtaattgagattgtttagaataat |
450 |
Q |
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| T |
19477502 |
atcttgtgatcgaaattgtttagaataat |
19477474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 39003114 - 39003165
Alignment:
| Q |
396 |
taacagttcaggaccttccgatctaaatcatgtaattgagattgtttagaat |
447 |
Q |
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| T |
39003114 |
taacagttcaggaccgtctgatctaaatcgtgtggttgagattgtttagaat |
39003165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 4149192 - 4149224
Alignment:
| Q |
278 |
ttatcaattattcactcttttttaccaaacaaa |
310 |
Q |
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| T |
4149192 |
ttatcaattattcactattttttaccaaacaaa |
4149224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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