View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6561_high_13 (Length: 410)
Name: NF6561_high_13
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 210 - 405
Target Start/End: Original strand, 31537211 - 31537406
Alignment:
| Q |
210 |
acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttattcnnnnnnngttataacagaagcagatatagtgattgcataatatt |
309 |
Q |
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| T |
31537211 |
acaattgcagaaaagcaataaccaaattaattccatattataacaaaagcttattcaaaaaaagttataacagaagcagatatagtgattgcataatatt |
31537310 |
T |
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| Q |
310 |
gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct |
405 |
Q |
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| T |
31537311 |
gaaagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagccattttgaatcttgtattcaaatgttctgtgctcct |
31537406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 31537043 - 31537169
Alignment:
| Q |
85 |
tcctaaggcattttatacattattgcatattttctatcaaaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatact |
184 |
Q |
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| T |
31537043 |
tcctaaggcattttatacattattgcatattttctatcaaaaaccatcctttcaaaaattattcttttatctaatcaccatagcaaaagagattgatact |
31537142 |
T |
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| Q |
185 |
caatgcaagtgcttcttggatcgatac |
211 |
Q |
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| T |
31537143 |
caatacaagtgcttctgggatcgatac |
31537169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 31532031 - 31532124
Alignment:
| Q |
312 |
aagaagaagaaaaggatcaaagtgtgcgtgacatacccattatattctcaaagtaagctattttgaaccttgtattcaaatgttctgtgctcct |
405 |
Q |
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| T |
31532031 |
aagaagaagaaaaggatcaaagtatgcgtgagatacccattatattctcaaagtaagcaattttgaaccttgtattcaaatgttatgtgctcct |
31532124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 31536603 - 31536677
Alignment:
| Q |
17 |
attttccataatcataattatctctttttgttatggaacttcggaacattctaattcaatctttttgttcctaag |
91 |
Q |
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| T |
31536603 |
attttccataatcataattatctctttttgttatggaacttcggaacattctaattcaatctttttgttcctaag |
31536677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 31531726 - 31531835
Alignment:
| Q |
85 |
tcctaaggcattttatacattattgcatat-tttctatcaaaaac-----catcctttcaaaaattattcttttatctaatcaccatagcaaaagagatt |
178 |
Q |
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| T |
31531726 |
tcctaagacattttttacattattgcatatatttctattaaaaaaaaaaacatcctttcaaaaattattcttgt---taatcaccatagcaaaagagatt |
31531822 |
T |
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| Q |
179 |
gatactcaatgca |
191 |
Q |
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| T |
31531823 |
gatactcgatgca |
31531835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 31529792 - 31529836
Alignment:
| Q |
220 |
aaaagcaataaccaaattaattccatattataacaaaagcttattc |
265 |
Q |
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| T |
31529792 |
aaaagcaataaccaa-ttaattccatattataacagaagcttattc |
31529836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 31531897 - 31531950
Alignment:
| Q |
210 |
acaagtgctgaaaagcaataaccaaattaattccatattataacaaaagcttatt |
264 |
Q |
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|||||||| |||||||||||||| ||||||||||| ||||||||| | ||||||| |
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| T |
31531897 |
acaagtgcagaaaagcaataacc-aattaattccacattataacagacgcttatt |
31531950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 37007957 - 37007997
Alignment:
| Q |
142 |
attattcttttatctaatcaccatagcaaaagagattgata |
182 |
Q |
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| T |
37007957 |
attattcttttagctgatcaccgtagcaaaagagattgata |
37007997 |
T |
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