View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6561_high_16 (Length: 380)
Name: NF6561_high_16
Description: NF6561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6561_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 181 - 361
Target Start/End: Original strand, 53749268 - 53749448
Alignment:
| Q |
181 |
cattaaagtgaaaggataagtagaagttaaatatgtgcagtgtgctcacccaacaacaaagaaagagtagccatcaagatgatagctctgaacaatgttc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53749268 |
cattaaagtgaaaggataagtagaagttaaatatgtgcagtgtgctcacccaacaacaaagaaagagtagccatcaagatgatagctctgaacaatgttc |
53749367 |
T |
|
| Q |
281 |
tcgttgttttggaagacaatctcaacaaaagatctgtaatcagcttgcatcacagatgtgtcaaggtaaaggccaccacca |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53749368 |
tcgttgttttggaagacaatctcaacaaaagatctgtaatcagcttgcatcacagatgtgtcaaggtaaaggccaccacca |
53749448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 53749050 - 53749139
Alignment:
| Q |
1 |
ataaattttagaaatactagagacacaatatcaattgaaataatttaagtcacaaagtgttaaattttagaaattccagagacacaatat |
90 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53749050 |
ataaattttagaaataccagagacacaatatcaattgaaataatttaagtcacaaagtgttaaattttagaaattccagagacacaatat |
53749139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 53749024 - 53749080
Alignment:
| Q |
34 |
attgaaataatttaagtcacaaagtgttaaattttagaaattccagagacacaatat |
90 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
53749024 |
attgaaataatttaagtcataaagtgataaattttagaaataccagagacacaatat |
53749080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 225 - 361
Target Start/End: Original strand, 8570702 - 8570838
Alignment:
| Q |
225 |
ctcacccaacaacaaagaaagagtagccatcaagatgatagctctgaacaatgttctcgttgttttggaagacaatctcaacaaaagatctgtaatcagc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||| |||||||||||||| | |||||| |||| |
|
|
| T |
8570702 |
ctcacccaacaacaaagaaagagtagccatctagatgatagctctgaaggatgtcttcgtcattttggaaaacaatctcaacaaatgttctgtagtcagt |
8570801 |
T |
|
| Q |
325 |
ttgcatcacagatgtgtcaaggtaaaggccaccacca |
361 |
Q |
| |
|
|||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
8570802 |
ttgcataacagaagtgtcgaggtaaataccaccacca |
8570838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University